MXO04163.5prime Sequence
783 bp (692 high quality bases) assembled on 2007-07-18
> MXO04163.5prime
CTCCTTTGNAGGAGTNTATCANNCGANATGGANTCGNTCAAGTTCCCAAA
GGCCAACAGTGCCACCAGCAGTGCCAGCGGCAGCAACAGCAACCTGTCCG
GTTCGACTTCCGCGTCCGCATCCGCAGCCACATCGCCTACATCGTCAGGA
ACTGCAGTGGGTGGCATTCTATCCGGTGCCCCAAAATCGCCACCTGGCCT
GGGCAGCAGCACCCCGATCTCGGTGCGATTCAATGCCAACGAGGAGTCCC
TGGACGACATCCTACAGTCCTTCCATCACAGCAAGCATAGTCCCAGTGGA
GGAGCGAGTGGCGGCGGAGATGCCTCGCCCACATCGAATCTGCTCGGGAT
GAAGAACAACGGGCTGGGATTGGTCGTGGGCAACTGTGACTCCCTCTCCA
GCAGTCCATCGCAGCCCCAGATGCATGCCGGATCCGCATCCCTCTTCGGC
AACGACGAAGTTAGTCTGCGCAATAATTTCATGCAAGCCGGTGGTTTCTT
CAATCGAAAAAGTTGCGGTGGCCTGCCGAATCTCAATCTCAACAAGCCGC
CCCAGCTCCACCAGCAACAGCATCAACAACAGCATCAGCAGCACCAGCAA
CATCAACAGCAGCAACAGCTCCATCAGCACCAACAGCAACTGTCGCCGAA
TCTGAGTGCCCTGCACCATCATCACCAGCAGCAGCAGCAGCTTCGGGAAA
GCGGAGGATCACATAGCCCCTCGTCGCCGGGTGGAGGAGGCGGAGGATCG
CCGTACCACGGCTCTCAGGCGGGCTGCAGCAGC
MXO04163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5735-PD | 2115 | orb2-RD | 1..756 | 28..783 | 3692 | 99.4 | Plus |
| CG5735-PB | 2115 | orb2-RB | 1..756 | 28..783 | 3692 | 99.4 | Plus |
| CG5735-PC | 2115 | orb2-RC | 1..756 | 28..783 | 3692 | 99.4 | Plus |
| CG5735-PA | 1656 | orb2-RA | 27..297 | 513..783 | 1330 | 99.6 | Plus |
| CG5488-PA | 1938 | B-H2-RA | 349..376 | 664..691 | 140 | 100 | Plus |
| CG11172-PA | 4260 | NFAT-RA | 565..617 | 562..614 | 140 | 90.5 | Plus |
| CG7835-PA | 492 | CG7835-RA | 120..146 | 667..693 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 422..1177 | 28..783 | 3728 | 99.5 | Plus |
| orb2-RH | 8400 | CG43782-RH | 495..1250 | 28..783 | 3728 | 99.5 | Plus |
| orb2-RC | 4187 | CG43782-RC | 495..1250 | 28..783 | 3728 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8948883..8949281 | 450..52 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 8944250..8944522 | 783..511 | 1350 | 99.6 | Minus |
| 3L | 28110227 | 3L | 8947828..8947889 | 512..451 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6882 | 553..711 | 343 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2517 | 540..694 | 330 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2469 | 540..691 | 327 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 540..691 | 316 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 564..691 | 257 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 590..691 | 212 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2979 | 547..691 | 211 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 584..688 | 192 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 577..696 | 191 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 592..691 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6814 | 54..157 | 155 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 621..691 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6891 | 63..156 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6838 | 54..157 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6856 | 54..157 | 128 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2449 | 54..156 | 123 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3141..3309 | 517..691 | 122 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2456 | 54..157 | 119 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6877 | 54..157 | 119 | 58.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 635..728 | 697..601 | 117 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2430 | 63..152 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 634..691 | 111 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2364 | 661..691 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1142 | 54..93 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2377 | 661..711 | 108 | 73.1 | Plus |
MXO04163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:54 Download gff for
MXO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5735-PD | 1..756 | 28..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:54 Download gff for
MXO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1250 | 24..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:13 Download gff for
MXO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1250 | 24..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:13 Download gff for
MXO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8944250..8944520 | 513..783 | 99 | <- | Minus |
| 3L | 8947828..8947889 | 451..512 | 100 | <- | Minus |
| 3L | 8948883..8949288 | 43..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:54 Download gff for
MXO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8937350..8937620 | 513..783 | 99 | <- | Minus |
| arm_3L | 8940928..8940989 | 451..512 | 100 | <- | Minus |
| arm_3L | 8941983..8942388 | 43..450 | 99 | | Minus |
