MXO04165.5prime Sequence
811 bp (743 high quality bases) assembled on 2007-07-18
> MXO04165.5prime
CAGNCGACATGGNCTACGNCAATCATCTGATTGTCAGCAATTTTTCATAT
TTCTGGGACGAGATCGATGGGTTAATGTTCCCAAAGTGCCTCCCAGGAAG
CCTGGCATCTAGTGTGGCATACTACTTTGCAACGAGGCCCGTTCCGGAAC
GACCGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGGGTCCAGAA
CAAATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGCAAGTTCGT
GTCCTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTTCCGCGAGG
GCGCCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCGAGACCCTG
ACCTCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTGCGTGCCAA
GAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAAGCAGTTGA
TTGGGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACGAGCAGGGC
TGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACCCTGGGCCC
CGATGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGTGGTGATTG
TGGAGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGCCGCGCAGT
CTGAAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACCCTGGAGCG
GGCACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGTGGAGAACT
AGGTGCCAAAGGCAACCATCCGGAGGTGCCGCCGACGGCGGAAGATCTTT
GCACGGTGTGC
MXO04165.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-PA | 2115 | CG3961-RA | 126..779 | 95..748 | 3245 | 99.8 | Plus |
| CG3961-PC | 2115 | CG3961-RC | 126..779 | 95..748 | 3245 | 99.8 | Plus |
| CG3961-PB | 1668 | CG3961-RB | 1..332 | 417..748 | 1660 | 100 | Plus |
| CG3961-PA | 2115 | CG3961-RA | 779..843 | 747..811 | 300 | 98.4 | Plus |
| CG3961-PC | 2115 | CG3961-RC | 779..843 | 747..811 | 300 | 98.4 | Plus |
| CG3961-PB | 1668 | CG3961-RB | 332..396 | 747..811 | 300 | 98.4 | Plus |
| CG3961-PA | 2115 | CG3961-RA | 22..85 | 9..72 | 257 | 95.3 | Plus |
| CG3961-PC | 2115 | CG3961-RC | 22..85 | 9..72 | 257 | 95.3 | Plus |
| CG3961-PA | 2115 | CG3961-RA | 96..124 | 97..69 | 145 | 100 | Minus |
| CG3961-PC | 2115 | CG3961-RC | 96..124 | 97..69 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RC | 3309 | CG3961-RC | 379..1200 | 9..811 | 3583 | 96.2 | Plus |
| CG3961-RA | 3373 | CG3961-RA | 443..1264 | 9..811 | 3583 | 96.2 | Plus |
| CG3961-RD | 2649 | CG3961-RD | 321..943 | 190..811 | 3075 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18880533..18880981 | 811..364 | 2180 | 99.6 | Minus |
| 3L | 28110227 | 3L | 18881078..18881253 | 365..190 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 18887060..18887157 | 192..95 | 475 | 99 | Minus |
| 3L | 28110227 | 3L | 18887552..18887598 | 55..9 | 198 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:02 has no hits.
MXO04165.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:59 Download gff for
MXO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-PC | 22..85 | 9..72 | 95 | == | Plus |
| CG3961-PC | 126..843 | 95..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:57 Download gff for
MXO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 443..506 | 9..72 | 95 | == | Plus |
| CG3961-RA | 547..1264 | 95..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:17 Download gff for
MXO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 443..506 | 9..72 | 95 | == | Plus |
| CG3961-RA | 547..1264 | 95..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:17 Download gff for
MXO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18880533..18880979 | 366..811 | 99 | <- | Minus |
| 3L | 18881078..18881251 | 192..365 | 100 | <- | Minus |
| 3L | 18887061..18887157 | 95..191 | 98 | == | Minus |
| 3L | 18887198..18887215 | 55..72 | 100 | <- | Minus |
| 3L | 18887553..18887598 | 9..54 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:57 Download gff for
MXO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18873633..18874079 | 366..811 | 99 | <- | Minus |
| arm_3L | 18874178..18874351 | 192..365 | 100 | <- | Minus |
| arm_3L | 18880161..18880257 | 95..191 | 98 | == | Minus |
| arm_3L | 18880298..18880315 | 55..72 | 100 | <- | Minus |
| arm_3L | 18880653..18880698 | 9..54 | 93 | | Minus |
