MXO04166.5prime Sequence
836 bp (717 high quality bases) assembled on 2007-07-18
> MXO04166.5prime
CCCTGTTAGGGAGTTATCAGTCGANATGGNGTTCCGGCTGCTCCCCACGG
CCAAAACGATGGCCGGAATGATGCGGCGCAACTACACGGCGGGTTCCTTG
CCGGGAAAGGGACAACGCACACACATGGGTGCCACGGGCGCCGGGGTTTA
CATCCTGCCCACGGAGCTGTCGCCCCTGCTGCGCTACGTGGTCAAACAGA
TCCAGCTGCTGTGCAAAAAGCCGCCGAAGGGATTTGAAAAGTATTTCGAA
GCCGGCGGCAAGTCGTCTGGCCAACCGAAGGGATCCGTCGGCGATAAGAA
GCCACCCGCGGGTTCCAGCAAATCCGCCTCGGAGAAGCCCAGCACATCGA
CACCCNGCCTCAGTTAAACCCAGCAGATCCCAAACAGACGCGAAATCGGA
CTGGAACTTCGGCATGTTCAGCAACAGCTCGAGGGGGCCAGCAGGAAAAG
GAGGCAACTCGCTGGGCGGACGACCTCTGGGCGAGAACGGTGGCGGCGGG
GACAGGGAGCGGTGGATCCTTCTGGGTGCCATCGGAGCCGTCGTCCTGGT
GGGTTCGTTCGCCTTCTTCGAGATGGGCTACAAGGAGATCTCGTGGAAGG
AGTTCGTCAACAGCTACCTGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTG
GTTAACAAGAAGTGGGTGAGAGTGCGTCTGCAGCAGAACAGCAACAGCGG
CAGCGGCGTCTTGTGGTTCAACATCGGCAGTGTCGATAGCTTCGAGCGAA
ACCTGGAGGCAGCCCAGACGGAGCAGGGAACGGAATCCATCAACTTTGTG
CCCGTAATCTACCGCAACGAGGTGGAGGGCCCAGTC
MXO04166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PA | 2481 | CG6512-RA | 331..802 | 357..828 | 2360 | 100 | Plus |
| CG6512-PB | 2094 | CG6512-RB | 1..415 | 414..828 | 2075 | 100 | Plus |
| CG6512-PA | 2481 | CG6512-RA | 21..330 | 46..355 | 1550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 261..1071 | 26..836 | 3939 | 99.1 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..648 | 364..836 | 2330 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17241217..17241721 | 613..108 | 2480 | 99.8 | Minus |
| 3L | 28110227 | 3L | 17240844..17241063 | 828..609 | 1100 | 100 | Minus |
| 3L | 28110227 | 3L | 17241784..17241868 | 110..26 | 369 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:04 has no hits.
MXO04166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:04 Download gff for
MXO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1..811 | 26..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:01 Download gff for
MXO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 257..1071 | 19..836 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:32 Download gff for
MXO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 257..1071 | 19..836 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:32 Download gff for
MXO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17240835..17241058 | 614..836 | 99 | <- | Minus |
| 3L | 17241217..17241719 | 110..613 | 99 | <- | Minus |
| 3L | 17241785..17241872 | 19..109 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:01 Download gff for
MXO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17233935..17234158 | 614..836 | 99 | <- | Minus |
| arm_3L | 17234317..17234819 | 110..613 | 99 | <- | Minus |
| arm_3L | 17234885..17234972 | 19..109 | 92 | | Minus |
