MXO04167.5prime Sequence
799 bp (749 high quality bases) assembled on 2007-07-18
> MXO04167.5prime
CAGNCGACATGCTGGAGGAGATGCAACCTATGAAGACCATTCCAGTGCTG
ACCAATTCCCGCCCGGAGTTTAAGCAGATACCTAAAAAACTCAGCAGGCA
TTTGGCCAATTTGGGAGGTCCACATGTGGATTCCTTCGACGAGATGCTGA
CCGTGGGACTGGATAACTCGGCCAAACACATGATCCCGAACCACTGGCTG
AGTCCTGCCGGCGAAAAGATTTCAATGAAAGTAGAATCAATATGGATAGC
GAAGCCAAAGGTGCCGCAAGATGTGATTGATGTGCGCACCCGAGAGATTT
ACCCCACGGACTCCAGGCAGCTCCATGTCTCCTACTCGGGAATGTGCTCG
GTCCGATTGGGGTGGAGTGTCAATGGAGTGCAAAAGACTCCCATAAACAT
GGACCTAGGAGAAGTGCCCATCATGTTGCGCTCCAAAGCCTGCAATCTGG
GACAGGCTACTCCGGAAGAAATGGTAAAACATGGAGAGCACGACAGCGAG
TGGGGGGGCATTTTTGTGATCCGAGGAAATGAGAAGATTGTACGTATGTT
GATCATGACCCGGAGGAACCATCCCATATGTGTAAAACGTTCATCCTGGA
AGGATCGTGGACAGAATTTTAGCGATTTGGGTATGTTAGTGCAAACGGTC
CGTGAGGACGAATCATCCCTGAGCAATGTAGTACATTATTTAAACAATGG
AACTGCAAAGTTTATGTTTTCTCACGTCAAGAGACTATCATACGTACCAG
TTTGCCTGATCCTCAAGTGCCTAATGGATTATACAGATGAGGAAATATA
MXO04167.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4033-PA | 3390 | RpI135-RA | 1..791 | 9..799 | 3905 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 98..890 | 7..799 | 3935 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 404535..405236 | 98..799 | 3510 | 100 | Plus |
| 2L | 23513712 | 2L | 404382..404473 | 7..98 | 430 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:05 has no hits.
MXO04167.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:09 Download gff for
MXO04167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 1..790 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:44 Download gff for
MXO04167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 92..889 | 1..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:08 Download gff for
MXO04167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 92..889 | 1..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:08 Download gff for
MXO04167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 404376..404473 | 1..98 | 93 | -> | Plus |
| 2L | 404536..405235 | 99..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:44 Download gff for
MXO04167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 404376..404473 | 1..98 | 93 | -> | Plus |
| arm_2L | 404536..405235 | 99..798 | 100 | | Plus |
