MXO04170.5prime Sequence
821 bp (758 high quality bases) assembled on 2007-07-18
> MXO04170.5prime
CCCTTTAGGGGGTTATCAGNNCGAATGGNTCAAATGANNGAGCTTAGGAG
GAGGTCGGNNCGATCTGGTACTGCCGCCAAGGAGAACCACAGCCTGACGG
GAAGGCAGAACCAGCAGAATCATCACAATCAGGGACACCAGCGCAGCGGC
AAGGGCATCGAGATACTCGACTTCCACGAATCGTGGCTGGAGGAGGTTGA
GCTGTACAAGGACAAGATGGTCATGTGCAAGAAGCTGGCCCATCACAATC
ACGTGCCCGCCTCATCGCACCACCTGCAGCCGCNACCTGGCCGCCCCGAA
TCGAAATCATGGCAGAATCGTCCAGTCCAGCACCCCGCAGCATCGCAGCT
CAGCCGGCGGAGGATCCGCGGCTGGAGCCACAGCATCCGATTCCGTCTCG
GCTCGCTACTCGCCNGCCTGGTCAAAAGCAAAGATCACCGCCCTCGCCGC
GCAAACGGCTGACGCCGGAGAAGGTGGCCAACCTAGGAGGAGGAGGCGGT
GGCTCAAAGGTAGGCGCGCAGCGCATCATCATCCGTGGAACGCCACCCAA
CAGCTCCACACCCAAGGTAGCCGCCACGCCCTCAAATGTTCCCGTCGTGG
CCAACAGTGTGCTCCAATCGGAGCCGTACAAGAAAGTCCAGATGCTATTG
AAGCGCGCAAGGGAGGAGGCCTTCGCCAAGCACACGGCTGGCAATTCAGC
CGCGAATGGCAACGGACCCAAGCGCTCCGCCCACAGTCCGCCCATTCAGG
CCAAGGTACCGCCGTCGAAATGTCCTGCCAAGCACCCAAACCTTAAGCCG
TCGCCGCCCAGCAGATTGTGG
MXO04170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3964-PB | 2970 | CG3964-RB | 390..743 | 416..769 | 1670 | 98.8 | Plus |
| CG3964-PA | 2949 | CG3964-RA | 390..743 | 416..769 | 1670 | 98.8 | Plus |
| CG3964-PB | 2970 | CG3964-RB | 37..259 | 61..283 | 1065 | 99.1 | Plus |
| CG3964-PA | 2949 | CG3964-RA | 37..259 | 61..283 | 1065 | 99.1 | Plus |
| CG3964-PB | 2970 | CG3964-RB | 260..389 | 285..414 | 625 | 99.2 | Plus |
| CG3964-PA | 2949 | CG3964-RA | 260..389 | 285..414 | 625 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3964-RC | 3518 | CG3964-RC | 295..1064 | 54..821 | 3568 | 97.9 | Plus |
| CG3964-RA | 3516 | CG3964-RA | 214..983 | 54..821 | 3568 | 97.9 | Plus |
| CG3964-RB | 3437 | CG3964-RB | 214..983 | 54..821 | 3568 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3863610..3864195 | 54..641 | 2713 | 98.1 | Plus |
| 2L | 23513712 | 2L | 3864539..3864716 | 639..813 | 725 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:46 has no hits.
MXO04170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:13 Download gff for
MXO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3964-PA | 22..799 | 46..821 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:33 Download gff for
MXO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3964-RB | 206..983 | 46..821 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:14 Download gff for
MXO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3964-RB | 206..983 | 46..821 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:14 Download gff for
MXO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3863602..3864195 | 46..641 | 97 | -> | Plus |
| 2L | 3864542..3864725 | 642..821 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:33 Download gff for
MXO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3863602..3864195 | 46..641 | 97 | -> | Plus |
| arm_2L | 3864542..3864725 | 642..821 | 97 | | Plus |
