MXO04172.5prime Sequence
821 bp (741 high quality bases) assembled on 2007-07-18
> MXO04172.5prime
TACCCTTTAGAGGGTTATCAGNCGANANGGNCNCAGCGAAAAAACCCTAA
AAAGACAGNAANCCGGAAGGNNCNGCCGCAAAGGGCANTANGGGCCNCAC
CCAAGGAGCACCGGACGCGAGCAAGGCNGGCTCNACNGNACCGCCGACGG
CCGAGGGNCAGGGCAAACNCAAGGGCCACCAGCAGGAGCAGGAACTCNTT
TTGCAGGCCTTTGAGAAGCCCACGCAGATCTATCGCTACCTGCGCAATCG
ACACGAGACAAACCCCATCTTCCTCAACCGCACGCTCAGCTACATGAAGG
AACGGATGTCGCGGAACAACAAGAAGCGGATCAGCTTCCAGGTAAACTCC
ATGCTGGAGAGCATAACACAAAAGTCGGAGGCGGTGAGCCAGAACTACCT
GCACGTCATCTACGATTCGCTGCACGAGAAGTTGCCGGCGAGGTTGGACA
ACGAGTCTGGCGAGGATTTGCTGCAGGAGCAGCTGCTCTGCGAAGCGGGC
GAGTCTGTGAGTGTGGAGACAACGCTGTACAAGATCACACGCAGCAAGCG
AAAGGACAGCACGCTGGACTTTCAGGAGCTGCTCAGCAAGTGCTCGCAGA
TCGTGTACAACCCAAAGGATCGTGTGGGAGAACATGCCACCATCAGCATT
CCTCTCCAGACGATGCGCCCAATGGGTGAGCAGCACACACTGTACAAGCT
GCTATTTCGCATCAAGGTGCTGTCGCCAAGTACGTGCAATGATGAGAATG
CAGAAACTCCACCGAACAAGCGGTCGCGTCCAAATGAAAAAATGTTCGGA
TCGGAACTGATATTGTACGAG
MXO04172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8013-PA | 2568 | Su(z)12-RA | 8..795 | 34..821 | 3405 | 96.8 | Plus |
| CG8013-PB | 2703 | Su(z)12-RB | 8..795 | 34..821 | 3405 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RB | 3936 | CG8013-RB | 482..1269 | 34..821 | 3625 | 96.8 | Plus |
| Su(z)12-RA | 4098 | CG8013-RA | 482..1269 | 34..821 | 3625 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19921967..19922456 | 753..264 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 19922799..19922981 | 216..34 | 615 | 86.9 | Minus |
| 3L | 28110227 | 3L | 19921837..19921909 | 821..749 | 350 | 98.6 | Minus |
| 3L | 28110227 | 3L | 19922685..19922731 | 263..217 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:32 has no hits.
MXO04172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:18 Download gff for
MXO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8013-PB | 1..795 | 27..821 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:24 Download gff for
MXO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 477..1269 | 29..821 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:57 Download gff for
MXO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 477..1269 | 29..821 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:57 Download gff for
MXO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19921837..19921904 | 754..821 | 98 | <- | Minus |
| 3L | 19921967..19922456 | 264..753 | 100 | <- | Minus |
| 3L | 19922685..19922731 | 217..263 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:24 Download gff for
MXO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19914937..19915004 | 754..821 | 98 | <- | Minus |
| arm_3L | 19915067..19915556 | 264..753 | 100 | <- | Minus |
| arm_3L | 19915785..19915831 | 217..263 | 100 | <- | Minus |
