MXO04178.5prime Sequence
739 bp (737 high quality bases) assembled on 2007-07-18
> MXO04178.5prime
CCCTTTGAGGGAGTTATNANNNNNANATGANNGNCTCAGNGGACCATGAG
AGGGNTCCCATAGCTAATTCCCGTAGTGGTCGTACGGGCAGTGTTTTCCG
CAGTTTCGGATCTTTATTCGGCGGCAGCCAAAACAGTGGCGATCGCCCCC
ACACCCCGCAGGATGGCGACGGATATGTGGAGTTCGGAATGCAGGACCCG
GATCGTAGTGGCCGTACGCTCGGTACCTTTGCCGGAGTTTTTAGTCCAGT
GGCTTTGTCCATGTTTAGTGCTTTGGTCTTCATTCGAGTCGGGTACATCG
TCGGAAATGCGGGCCTGTATGTAACCCTGCTGCAGTTCCTCATCGCCTAC
GGAATTCTGCTCTTCACGGTGGCTTCGGTCTGCGCCATTTCCACCAATGG
AGCCATCGAGGGAGGGGGAGTTTATTTCATGATTAGTCGAACGCTGGGAC
TGGAGTTTGGTGGCTCGATCGGAACCCTCTTTTTCTTTGCCAATGTGGTG
GGATCTGCAATGGCCATATCCGGCTGCACTGAGGGCATCATGGATAACTT
CGGACCGCGTGGCCATTTTGTGAGCGGGGACTCCCACCTACCGGATGGGG
ATTGGTGGCGTTTCCTTACCAGCAGCATGATAAACACCCTGCAACTGCTG
GTTTGCCTGGTGGGCGCCGCTCTGTTCGCCAAGACGTCAGTGATTATTTT
GGCCACCGTCACCGTTTGCCTGTTCGCCACTTACTTTAG
MXO04178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10413-PA | 2826 | CG10413-RA | 30..713 | 56..739 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10413-RB | 4010 | CG10413-RB | 344..1042 | 41..739 | 3439 | 99.4 | Plus |
| CG10413-RA | 3783 | CG10413-RA | 117..815 | 41..739 | 3439 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18603738..18604050 | 739..427 | 1565 | 100 | Minus |
| 2L | 23513712 | 2L | 18604655..18604906 | 292..41 | 1204 | 98.4 | Minus |
| 2L | 23513712 | 2L | 18604433..18604568 | 426..291 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:02 has no hits.
MXO04178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:33 Download gff for
MXO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-PA | 15..713 | 41..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:15 Download gff for
MXO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 117..815 | 41..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:00 Download gff for
MXO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 117..815 | 41..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:00 Download gff for
MXO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18603738..18604050 | 427..739 | 100 | <- | Minus |
| 2L | 18604433..18604567 | 292..426 | 100 | <- | Minus |
| 2L | 18604656..18604906 | 41..291 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:15 Download gff for
MXO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18603738..18604050 | 427..739 | 100 | <- | Minus |
| arm_2L | 18604433..18604567 | 292..426 | 100 | <- | Minus |
| arm_2L | 18604656..18604906 | 41..291 | 98 | | Minus |
