MXO04187.5prime Sequence
891 bp (783 high quality bases) assembled on 2007-07-18
> MXO04187.5prime
ACCTTAAAGGATCTTATCAGNNCGAATGGNATCNGGNCGNCCCCTACTCG
ACCTCTCACTGCCCGGTGTAGCATTTATACTCGGCGTCTTTTGGTTTCGG
CGTAGATATAAAAATTGTTTAGACAAGCCCGACGACGAGGACTCATCGGC
CATCAATGACTCGTCGATTGAACCAACTGTGCAGGCGCGCAAGGCCAACG
GAGTCCTGCAGAATGGCAAGCTGCCACAGCAGTCGGCCAGCAAGTCGATG
AACATCAACGGAACTTTAGTTAACGGTAGCGGAAGCGGTAGCGGAAGTAG
CAGTGATGAGAAGGACAGCCCCACTACCATGTTGTATGGTAAATCAGCAC
CAATCAAAATCCAGAGCAATGGACGCACTTCAAATGGCAAGCATCAGCAG
CAGATCGATTCCGAAATACTGAAGTCAAAGATACAGGATGCCGAACACAA
GACACTCTGCTCCATAGACGAGGATTTCGAGAATCTATCGTCGCCACGTG
ATTTACCCGATTCGGTAAATACACGCGTATCCTTCTACAATCGTAAGGCT
ACCCAAAAGACGGTGGAACCGGTGGTGATTAAGGCCACGCGCACACCCAA
AATATCGCCAGAGAACTCCTTCCTGGATACCAACTACACCAACAAGGAGT
GCGAGCAGAACAACAACTGTGAGCCCAAGGAGGAGCCCTCCAAGAAGGAG
GCCGATCAGGAGGAGCTCGAGCAGGATCAGGAGCAGACGGTGCTGAAGGA
GGAAGTGGTGGATAGCAATGGTAATCAGAAGCGCAATGTGGATGCGGCCA
GTCCATCGCTGAGCATTTGCAGTGTGCAATCGGGCGATTCTGGCAAGGGA
TCCAGCTTGCCGCGCTCGGAGGCGACACGCGTGAAAACCAC
MXO04187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3249-PB | 1758 | CG3249-RB | 19..866 | 44..891 | 4215 | 99.8 | Plus |
| CG3249-PA | 1758 | CG3249-RA | 19..866 | 44..891 | 4215 | 99.8 | Plus |
| CG3249-PC | 1824 | CG3249-RC | 85..932 | 44..891 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RA | 3341 | CG3249-RA | 437..1303 | 25..891 | 4261 | 99.3 | Plus |
| spoon-RE | 3179 | CG3249-RE | 275..1141 | 25..891 | 4261 | 99.3 | Plus |
| spoon-RD | 3668 | CG3249-RD | 764..1630 | 25..891 | 4261 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416488..5417354 | 891..25 | 4261 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:39 has no hits.
MXO04187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:49 Download gff for
MXO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-PC | 66..932 | 25..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:27 Download gff for
MXO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 238..1104 | 25..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:01 Download gff for
MXO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 764..1630 | 25..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:01 Download gff for
MXO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5416488..5417354 | 25..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:27 Download gff for
MXO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5310521..5311387 | 25..891 | 99 | | Minus |
