MXO04189.5prime Sequence
874 bp (815 high quality bases) assembled on 2007-07-18
> MXO04189.5prime
CCCTTGAGGGAGTTATCAGNCGANATGGACTACGCCGNCAATCTTTACGC
GGATATGGGACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAG
CATCCGACTTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAA
GTGATTGGATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAA
CTTCATTATGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACT
TGGCCATAATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGC
TACGAGAAGGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGG
CCTGGACTTTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAA
TATTAGCCCATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTC
ACCAAGGGGAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGT
CCTGCTCTCGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCC
TCACACAAAAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCC
GCAGCAGTGGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTNCGC
CGACGGAGCCGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAAC
AATGCAAATCCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGG
AGCTCCACCGGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGA
CCCTTAACGGATATTTGGCCACGGCGCAGCAGCTGCCGCACCAGCACGGC
ATCAGTGTGGAGACGCTAATGGAG
MXO04189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11299-PA | 1494 | CG11299-RA | 22..622 | 46..646 | 3005 | 100 | Plus |
| CG11299-PA | 1494 | CG11299-RA | 623..849 | 648..874 | 1110 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sesn-RC | 4745 | CG11299-RC | 1054..1902 | 25..874 | 4124 | 99.1 | Plus |
| Sesn-RB | 3053 | CG11299-RB | 1025..1873 | 25..874 | 4124 | 99.1 | Plus |
| Sesn-RA | 3097 | CG11299-RA | 1069..1917 | 25..874 | 4124 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23731155..23731529 | 443..818 | 1830 | 99.7 | Plus |
| 2R | 25286936 | 2R | 23729049..23729235 | 76..262 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23730909..23731091 | 262..444 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 23731652..23731708 | 818..874 | 270 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:37 has no hits.
MXO04189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:15:59 Download gff for
MXO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11299-PA | 22..849 | 46..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:11 Download gff for
MXO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sesn-RA | 1090..1917 | 46..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:39 Download gff for
MXO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sesn-RA | 1090..1917 | 46..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:39 Download gff for
MXO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23722846..23722875 | 46..75 | 100 | -> | Plus |
| 2R | 23729049..23729234 | 76..261 | 100 | -> | Plus |
| 2R | 23730909..23731091 | 262..444 | 100 | -> | Plus |
| 2R | 23731157..23731529 | 445..818 | 99 | -> | Plus |
| 2R | 23731653..23731708 | 819..874 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:11 Download gff for
MXO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19610369..19610398 | 46..75 | 100 | -> | Plus |
| arm_2R | 19616572..19616757 | 76..261 | 100 | -> | Plus |
| arm_2R | 19618432..19618614 | 262..444 | 100 | -> | Plus |
| arm_2R | 19618680..19619052 | 445..818 | 99 | -> | Plus |
| arm_2R | 19619176..19619231 | 819..874 | 98 | | Plus |
