MXO04192.5prime Sequence
705 bp (705 high quality bases) assembled on 2007-07-18
> MXO04192.5prime
CTTTTAGGGCGTTATCAGNCGANAGGGNNGAAGAGAAGAAGACTGTAAAG
AAGAAGAAGAACAAGGAAGAGGGGGGNACNTCCGAAACCGCTTCTGAGGC
CGCATCCGAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCG
CATCTGCCACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGG
AAGTCGAAGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCA
GATCGCCGAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACG
GTATTATTGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAG
ATCGCCAACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCC
GATCAACTTCACCCAGTTGCTGACCCTGTTCGCCACCGCATGGCCACCTC
CGGTGCCAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCG
ATAACGATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAAC
TTCGGTGACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGAT
GGTGATCGACGACAAGAACCAGATCGATACCGCNCGCCCTGATCGAGATG
CTCACCGGCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCGCAAGCTTTCT
AGACC
MXO04192.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2184-PA | 669 | Mlc2-RA | 25..412 | 48..435 | 1852 | 98.9 | Plus |
| CG2184-PB | 606 | Mlc2-RB | 25..264 | 48..287 | 1112 | 98.3 | Plus |
| CG2184-PA | 669 | Mlc2-RA | 413..611 | 435..633 | 995 | 100 | Plus |
| CG2184-PB | 606 | Mlc2-RB | 350..548 | 435..633 | 995 | 100 | Plus |
| CG2184-PB | 606 | Mlc2-RB | 265..349 | 351..435 | 425 | 100 | Plus |
| CG2184-PA | 669 | Mlc2-RA | 612..666 | 635..689 | 275 | 100 | Plus |
| CG2184-PB | 606 | Mlc2-RB | 549..603 | 635..689 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlc2-RA | 2286 | CG2184-RA | 75..731 | 33..689 | 3143 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30172993..30173414 | 689..268 | 2015 | 99.5 | Minus |
| 3R | 32079331 | 3R | 30173571..30173808 | 270..33 | 1093 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:29 has no hits.
MXO04192.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:16:09 Download gff for
MXO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2184-PA | 7..669 | 30..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:00 Download gff for
MXO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc2-RA | 72..735 | 30..694 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:34 Download gff for
MXO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc2-RA | 72..735 | 30..694 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:34 Download gff for
MXO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30172989..30173412 | 270..694 | 99 | <- | Minus |
| 3R | 30173572..30173811 | 30..269 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:00 Download gff for
MXO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25998711..25999134 | 270..694 | 99 | <- | Minus |
| arm_3R | 25999294..25999533 | 30..269 | 96 | | Minus |
