MXO52501.5prime Sequence
904 bp (758 high quality bases) assembled on 2007-04-11
> MXO52501.5prime
CAGTCGACATGGCCGGAGCAACACCTTTCGAGCGTGCCCAGGCATTGTCC
AGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAACTGGTCCG
CGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAATCAAGGAGC
AGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCAAGGCCAAG
GAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGCTCGATCAG
CAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACATGTTCCTGG
ACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAGACTGCATT
GAGTGGGCCAAACAGGAGAAGCGCACTTTTCTTCGCCAATCGCTGGAAGC
TCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGAGGCCTTGG
CTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATGACAAGAAT
CTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCACGCACTGAG
CAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCACCACGGCCA
ATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATCTTCAGTCC
GGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCATTCTCCTA
TTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGTCAAGGCCT
TGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGGGACAGTCC
GATGATGTCAACCAGCTCGTCAGTGAAAAGCTGGCTATTACCTATTCGGG
CCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACACAAACGTT
CCCT
MXO52501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10149-PA | 1320 | Rpn6-RA | 52..947 | 9..904 | 4405 | 99.6 | Plus |
| CG10149-PB | 1269 | Rpn6-RB | 1..896 | 9..904 | 4405 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn6-RC | 1662 | CG10149-RC | 74..969 | 9..904 | 4435 | 99.7 | Plus |
| Rpn6-RB | 1827 | CG10149-RB | 239..1134 | 9..904 | 4435 | 99.7 | Plus |
| Rpn6-RA | 1612 | CG10149-RA | 126..1021 | 9..904 | 4435 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14751144..14751653 | 834..325 | 2520 | 99.6 | Minus |
| 2R | 25286936 | 2R | 14751714..14752033 | 328..9 | 1585 | 99.7 | Minus |
| 2R | 25286936 | 2R | 14750925..14750996 | 904..833 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:17 has no hits.
MXO52501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:46 Download gff for
MXO52501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10149-PB | 1..896 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:07 Download gff for
MXO52501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 117..1021 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:49 Download gff for
MXO52501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 117..1021 | 1..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:49 Download gff for
MXO52501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14751145..14751651 | 327..833 | 99 | <- | Minus |
| 2R | 14751716..14752039 | 1..326 | 98 | | Minus |
| 2R | 14750925..14750995 | 834..904 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:07 Download gff for
MXO52501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10638430..10638500 | 834..904 | 100 | <- | Minus |
| arm_2R | 10638650..10639156 | 327..833 | 99 | <- | Minus |
| arm_2R | 10639221..10639544 | 1..326 | 98 | | Minus |
