MXO52502.5prime Sequence
638 bp (573 high quality bases) assembled on 2007-04-11
> MXO52502.5prime
CAGTCGACATGATTATTACAATTAAAAATCTTCAACAGCAAACTTTTACT
ATTGAGTTTGCCCCGGAAAAAACGGTTTTGGAACTGAAGAAGAAAATATT
CGAGGAGCGCGGTCCAGAGTACGTCGCCGAAAAACAAAAACTGATCTACG
CTGGCGTCATATTGACGGATGACCGCACCGTTGGTTCATACAACGTTGAT
GAAAAAAAGTTCATTGTGGTAATGTTGACACGCGATTCGTCTAGTTCAAA
TCGTAATCAACTTAGTGTAAAAGAAAGTAATAAATTGACTAGCACCGACG
ATTCAAAGCAATCTATGCCTTGCGAAGAAGCCAACCATACCAATTCGCCT
AGTTCCACAAATACAGAAGATTCAGTTTTATCACCCGCCCCCAGACCTTT
ATCTAGTGACGAATTGATTGGCGAGTTGGCCCAGGCTTCCTTACAATCGC
GCGCTGAATCTAATTTGCTTATGGGTGACGAATACAACCAAACAGTCCTA
TCAATGGTGGAAATGGGTTACCCAAGAGAGCAGGTTGAACGTGCGATGGC
TGCTAGTTATAACAACCCGGAAAGAGCCGTTGAATATCTCATTAATGGCA
TACCTGCAGAGGAAGGTACTTTTTTACATAGGCTGAAT
MXO52502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1836-PA | 1245 | Rad23-RA | 1..376 | 9..384 | 1880 | 100 | Plus |
| CG1836-PA | 1245 | Rad23-RA | 383..616 | 391..624 | 1170 | 100 | Plus |
| CG1836-PB | 1032 | Rad23-RB | 170..403 | 391..624 | 1170 | 100 | Plus |
| CG1836-PB | 1032 | Rad23-RB | 1..163 | 222..384 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad23-RC | 2009 | CG1836-RC | 132..761 | 9..638 | 3030 | 98.9 | Plus |
| Rad23-RA | 1489 | CG1836-RA | 132..761 | 9..638 | 3030 | 98.9 | Plus |
| Rad23-RB | 1507 | CG1836-RB | 132..779 | 9..638 | 2840 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 308426..308994 | 70..638 | 2710 | 98.4 | Plus |
| 4 | 1348131 | 4 | 308224..308291 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:28 has no hits.
MXO52502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:47 Download gff for
MXO52502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1836-PA | 1..630 | 9..638 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:35 Download gff for
MXO52502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad23-RA | 126..761 | 1..638 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:07 Download gff for
MXO52502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad23-RA | 126..761 | 1..638 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:07 Download gff for
MXO52502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 308218..308289 | 1..74 | 94 | -> | Plus |
| 4 | 308431..308994 | 75..638 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:35 Download gff for
MXO52502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 328844..328915 | 1..74 | 94 | -> | Plus |
| arm_4 | 329057..329620 | 75..638 | 98 | | Plus |
