MXO52503.5prime Sequence
495 bp (495 high quality bases) assembled on 2007-04-11
> MXO52503.5prime
CAGTCGACATGATGCTTTTCATGCCGTTGTATAGTCGGCAGGGCAAACTG
CGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAAAAGAAGAC
CACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAAAATGTGCT
CCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGTATGCCAGC
TTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTGCTGACACT
GGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTTCGGCAGCG
TCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACTTTATCCTG
GATGAGCTGCTCATTGGCGGCGAAATCCTTGACACCCCCAAAAAGAACGT
ACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGAGACCCCGC
AGAGTTTCTTCGACGATCACGGCCTGGGCGCAAGCTTTCTAGACC
MXO52503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5864-PA | 474 | AP-1sigma-RA | 1..370 | 9..378 | 1750 | 98.9 | Plus |
| CG5864-PA | 474 | AP-1sigma-RA | 380..471 | 388..479 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 9..479 | 2220 | 98.1 | Plus |
| AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 9..439 | 2020 | 97.9 | Plus |
| AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 9..439 | 2020 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23959031..23959212 | 11..192 | 850 | 97.8 | Plus |
| 3R | 32079331 | 3R | 23959456..23959594 | 300..438 | 620 | 96.4 | Plus |
| 3R | 32079331 | 3R | 23959278..23959390 | 189..301 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 23962049..23962092 | 436..479 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:52 has no hits.
MXO52503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:49 Download gff for
MXO52503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5864-PA | 1..474 | 9..483 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:53 Download gff for
MXO52503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RA | 146..622 | 9..487 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:25 Download gff for
MXO52503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RA | 146..622 | 9..487 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:25 Download gff for
MXO52503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23959024..23959210 | 1..190 | 95 | -> | Plus |
| 3R | 23959280..23959388 | 191..299 | 100 | -> | Plus |
| 3R | 23959456..23959593 | 300..437 | 96 | -> | Plus |
| 3R | 23962051..23962098 | 438..487 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:53 Download gff for
MXO52503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19784746..19784932 | 1..190 | 95 | -> | Plus |
| arm_3R | 19785002..19785110 | 191..299 | 100 | -> | Plus |
| arm_3R | 19785178..19785315 | 300..437 | 96 | -> | Plus |
| arm_3R | 19787773..19787820 | 438..487 | 94 | | Plus |
