MXO52504.5prime Sequence
851 bp (825 high quality bases) assembled on 2007-04-11
> MXO52504.5prime
CAGTCGACATGGCTTTAGCTGAAATCTGCAAGATATCGAATGCTCCGTAC
ATGCGGCCCAATGCCTGGTCATCGGCGGATGTGGAGGAAGAGCAAAAAGG
GCTTATGTGCAATCTGGCCAATCCCTACACACTGGCTGCTCCGCCATTCG
AGAACCCCCTGCACAACCTTAATCAGATCCAGGCCAATGGCGACAAGACC
GGCGTCAAAATCAACTTCGATCACGGCACCACAACGTTGGGCTTCAAGTT
CAAGGGCGGCGTTCTCCTGGCAGTCGATTCCCGTGCCACGGGTGGATCGT
ACATTGGCTCCCAGTCGATGAAGAAGATCGTGGAGATCAATCAGTTCATG
CTGGGCACCTTGGCCGGTGGCGCAGCCGATTGCGTTTACTGGGACAGGGT
CCTTTCGAAGGAATGCCGCCTTCACGAGCTTCGAAACAAGGAACGCATCT
CGGTGGCCGCCGCCAGCAAGATAATGGCCAACATTGCCCACGAATACAAG
GGAATGGGTCTGAGCATGGGCATGATGCTGGCCGGTTACGATAAGCGTGG
TCCAGGCCTCTACTATGTGGACTCCGAGGGATCTCGCACGCCTGGCAATT
TGTTCTCTGTTGGTAGTGGATCGCTGTACGCCTACGGTGTCCTGGACTCT
GGCTATCATTGGGACCTGGAGGACAAGGAGGCCCAGGAGCTGGGACGTCG
CGCCATCTACCATGCCACCTTCAGGGATGCCTACTCCGGTGGTATCATTC
GCGTGTATCACATTAAGGAGGACGGCTGGGTAAACATCTCCAACACCGAC
TGCATGGAGCTGCACTACATGTACCAGGAGCAGTTGAAGCAGCAGGCCGC
T
MXO52504.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12323-PB | 849 | Prosbeta5-RB | 1..843 | 9..851 | 4215 | 100 | Plus |
| CG12323-PA | 849 | Prosbeta5-RA | 1..843 | 9..851 | 4215 | 100 | Plus |
| CG31742-PA | 840 | CG31742-RA | 478..523 | 492..537 | 155 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta5-RA | 1139 | CG12323-RA | 96..938 | 9..851 | 4215 | 100 | Plus |
| Prosbeta5-RB | 1076 | CG12323-RB | 33..875 | 9..851 | 4215 | 100 | Plus |
| Prosbeta5R1-RA | 1107 | CG9868-RA | 373..609 | 299..535 | 255 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10820282..10820977 | 156..851 | 3480 | 100 | Plus |
| 2R | 25286936 | 2R | 10820073..10820219 | 9..155 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 23309152..23309388 | 535..299 | 255 | 73.8 | Minus |
| 2L | 23513712 | 2L | 17990976..17991021 | 492..537 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:22 has no hits.
MXO52504.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:49 Download gff for
MXO52504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12323-PA | 1..843 | 9..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:37 Download gff for
MXO52504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5-RB | 31..875 | 6..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:24 Download gff for
MXO52504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5-RB | 31..875 | 6..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:24 Download gff for
MXO52504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10820071..10820219 | 6..155 | 99 | -> | Plus |
| 2R | 10820282..10820977 | 156..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:37 Download gff for
MXO52504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6707576..6707724 | 6..155 | 99 | -> | Plus |
| arm_2R | 6707787..6708482 | 156..851 | 100 | | Plus |
