MXO52506.5prime Sequence
336 bp (336 high quality bases) assembled on 2007-04-11
> MXO52506.5prime
CAGTCGACATGTCGCACACCATCCTCTTGGTACAGCCGGGTGCTCGTCCG
GAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGCATGGAGGG
CGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCCAAACACTC
CGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCGACACAATG
GTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACCTATGCGCC
CTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCTCCGTCAGG
CGGCATTTAGTTCCAATACCGCAAGCTTTCTAGACC
MXO52506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1871-PA | 315 | e(r)-RA | 1..312 | 9..320 | 1535 | 99.6 | Plus |
| CG1871-PB | 315 | e(r)-RB | 1..312 | 9..320 | 1535 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e(r)-RE | 1332 | CG1871-RE | 312..624 | 8..320 | 1550 | 99.7 | Plus |
| e(r)-RD | 1191 | CG1871-RD | 171..483 | 8..320 | 1550 | 99.7 | Plus |
| e(r)-RC | 1199 | CG1871-RC | 179..491 | 8..320 | 1550 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8905067..8905379 | 320..8 | 1550 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:29 has no hits.
MXO52506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:50 Download gff for
MXO52506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1871-PB | 1..315 | 9..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:39 Download gff for
MXO52506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 173..496 | 1..325 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:28 Download gff for
MXO52506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 173..496 | 1..325 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:28 Download gff for
MXO52506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8905062..8905387 | 1..325 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:39 Download gff for
MXO52506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8799095..8799420 | 1..325 | 98 | | Minus |
