MXO52508.5prime Sequence
916 bp (777 high quality bases) assembled on 2007-04-11
> MXO52508.5prime
CAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGGTCGTCATA
GGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGCAGGATAGG
CAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGATGTTTGGA
GCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGGAAGTCGAG
CCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCCATGGAAAA
AGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGTGCTGGCCA
AGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTATACGCAGCC
GGGGAGCTGGTGCAGTTGCTCATCAAGTCTAACATCTGCCGCTATGCTGA
ATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGAAATTGTGT
CCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACACTGACCATC
GTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAACGATTACGG
CGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACGAACGTTTC
TGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGTCGTGCGTG
ATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAGGAGGGTAT
GCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGGCAACACAC
CCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGTGCTTCTGC
CGTTTGTGCGCTGTTTATGGTGGCATTTACTGCCTAAAGCGAGCCGTTGA
CGACATTGCCTTAGATTCAATTCGAATGAGTTCCTGCTGAACAGCGCAAG
GAAAACTTTGCGTGGC
MXO52508.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8432-PA | 1536 | Rep-RA | 1..907 | 9..914 | 4420 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rep-RA | 1923 | CG8432-RA | 136..1044 | 7..914 | 4475 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19492329..19493189 | 55..914 | 4210 | 99.5 | Plus |
| 2R | 25286936 | 2R | 19492222..19492273 | 7..58 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:18 has no hits.
MXO52508.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:51 Download gff for
MXO52508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8432-PA | 1..908 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:18 Download gff for
MXO52508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 130..1045 | 1..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:59 Download gff for
MXO52508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 130..1045 | 1..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:59 Download gff for
MXO52508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19492216..19492272 | 1..57 | 93 | -> | Plus |
| 2R | 19492332..19493190 | 58..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:18 Download gff for
MXO52508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15379721..15379777 | 1..57 | 93 | -> | Plus |
| arm_2R | 15379837..15380695 | 58..916 | 99 | | Plus |
