MXO52511.5prime Sequence
849 bp (753 high quality bases) assembled on 2007-04-11
> MXO52511.5prime
CAGTCGACATGGCAACCGGCGTCATCCATAGTAGCGTTGTCTCCACCTCC
GCCGGACGCCAGAATATCTGCGACTGCCTGGAACAGGAGTCCGCCGGATT
GGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATCAGCTCTCGGAACTCA
CCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACGGATCTTCAGCATCCG
AACACCCAGTCCGGTCACCTGCCCGTGGAGCACAGACACCGACCCGTGAG
CTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCAAGGAGTCGCCCATCT
TCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAGACCCAGCTGCATCCG
CCGCTCAGCTCCTCCCAGTTCTCGCTGCTAATTGCTTCTCCGGCCTACGC
CGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAGAGGCGCTGCAACTGA
CCACGGTCATGCCCGCGGGAGTCAACCGTAACCACATGGACATCAACAGG
AACAACGGATACCTGCACAACGGAGCCATCATGACATCCACCAGCGATAA
GCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGGCACCGGCA
AGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCCAGAACTAC
AGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAGTGGGACGC
CAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCAGGAGAGGT
TTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCGCGTTCATC
GTTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCGTGAGCAAGTGGA
MXO52511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8024-PE | 1167 | ltd-RE | 1..841 | 9..849 | 4130 | 99.6 | Plus |
| CG8024-PC | 1167 | ltd-RC | 1..841 | 9..849 | 4130 | 99.6 | Plus |
| CG8024-PD | 669 | ltd-RD | 18..343 | 524..849 | 1630 | 100 | Plus |
| CG8024-PA | 1158 | ltd-RA | 508..832 | 525..849 | 1625 | 100 | Plus |
| CG8024-PB | 2061 | ltd-RB | 1411..1735 | 525..849 | 1625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1451 | 8..849 | 4165 | 99.6 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1260 | 8..849 | 4165 | 99.6 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..552 | 524..849 | 1630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 525..8 | 2545 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9178901..9179225 | 849..525 | 1625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:41 has no hits.
MXO52511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:53 Download gff for
MXO52511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8024-PC | 1..840 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:00 Download gff for
MXO52511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 413..1259 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:51 Download gff for
MXO52511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 413..1259 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:51 Download gff for
MXO52511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178902..9179225 | 525..848 | 100 | <- | Minus |
| 2R | 9185217..9185737 | 1..524 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:00 Download gff for
MXO52511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066407..5066730 | 525..848 | 100 | <- | Minus |
| arm_2R | 5072722..5073242 | 1..524 | 98 | | Minus |
