MXO52512.5prime Sequence
810 bp (807 high quality bases) assembled on 2007-04-11
> MXO52512.5prime
CAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCACACCCACT
GTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCTATTCTGCG
CAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCATCGAGATCC
TGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGGCGTTCAAG
ACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAACTGGGCGG
CAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCCCCAGTTCT
ATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCGACGAGGAG
GCCATCATCGAGATCCTCTGCACGCTGTTTTTCTACCCCATCAAGACCAT
TGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTCCGACCTGA
AGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGCTCGTCCAG
GGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCCATCGCCGA
TGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCACAGATGAGT
CCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGCTGCGCCAG
ATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAGAAGGCCAT
CAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGCCATCGTCA
AGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGCACGACTCA
ATGGCCGGCA
MXO52512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5730-PD | 975 | AnnIX-RD | 381..802 | 389..810 | 2110 | 100 | Plus |
| CG5730-PA | 975 | AnnIX-RA | 381..802 | 389..810 | 2110 | 100 | Plus |
| CG5730-PB | 975 | AnnIX-RB | 381..802 | 389..810 | 2110 | 100 | Plus |
| CG5730-PC | 975 | AnnIX-RC | 381..802 | 389..810 | 2110 | 100 | Plus |
| CG5730-PD | 975 | AnnIX-RD | 1..370 | 9..378 | 1850 | 100 | Plus |
| CG5730-PA | 975 | AnnIX-RA | 1..370 | 9..378 | 1850 | 100 | Plus |
| CG5730-PB | 975 | AnnIX-RB | 1..370 | 9..378 | 1850 | 100 | Plus |
| CG5730-PC | 975 | AnnIX-RC | 1..370 | 9..378 | 1850 | 100 | Plus |
| CG9968-PA | 969 | Anxb11-RA | 307..352 | 333..378 | 155 | 93.4 | Plus |
| CG9968-PB | 1536 | Anxb11-RB | 874..919 | 333..378 | 155 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RF | 1457 | CG5730-RF | 95..896 | 9..810 | 3920 | 99.3 | Plus |
| AnxB9-RE | 1456 | CG5730-RE | 94..895 | 9..810 | 3920 | 99.3 | Plus |
| AnxB9-RC | 1432 | CG5730-RC | 70..871 | 9..810 | 3920 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 37..747 | 3465 | 99.2 | Plus |
| 3R | 32079331 | 3R | 21068837..21068900 | 747..810 | 320 | 100 | Plus |
| X | 23542271 | X | 16418710..16418779 | 378..309 | 200 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:58 has no hits.
MXO52512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:53 Download gff for
MXO52512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5730-PB | 1..801 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:58 Download gff for
MXO52512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..870 | 1..809 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:27 Download gff for
MXO52512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..870 | 1..809 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:27 Download gff for
MXO52512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067462..21067499 | 1..38 | 92 | -> | Plus |
| 3R | 21068069..21068777 | 39..747 | 99 | -> | Plus |
| 3R | 21068838..21068899 | 748..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:58 Download gff for
MXO52512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893184..16893221 | 1..38 | 92 | -> | Plus |
| arm_3R | 16893791..16894499 | 39..747 | 99 | -> | Plus |
| arm_3R | 16894560..16894621 | 748..809 | 100 | | Plus |
