MXO52514.5prime Sequence
573 bp (573 high quality bases) assembled on 2007-04-11
> MXO52514.5prime
CAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGGACAACGAT
GTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTGGGAGGCCT
CAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCCCTACGAGG
GCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATCCCTTCAAG
TCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAACATTGACGA
ATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTGGACGGCGT
TGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGCTGCTCACA
TATCCCAATCCGGTCGATCCGCTCAATCTGGATGCGGCCGCATTGTACCT
GCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGTGCAGCGCT
ATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGGAGAGCAGC
GACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCCAGGGACAT
GGAATTAGCAAGCTTTCTAGACC
MXO52514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2257-PA | 552 | Ubc-E2H-RA | 1..549 | 9..557 | 2720 | 99.8 | Plus |
| CG2257-PC | 552 | Ubc-E2H-RC | 1..549 | 9..557 | 2720 | 99.8 | Plus |
| CG2257-PB | 552 | Ubc-E2H-RB | 1..549 | 9..557 | 2720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UbcE2H-RB | 2292 | CG2257-RB | 441..989 | 9..557 | 2730 | 99.8 | Plus |
| UbcE2H-RC | 2328 | CG2257-RC | 477..1025 | 9..557 | 2730 | 99.8 | Plus |
| UbcE2H-RA | 2894 | CG2257-RA | 578..1126 | 9..557 | 2730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8089312..8089860 | 557..9 | 2730 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 21:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 8..59 | 107 | 67.3 | Plus |
MXO52514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:54 Download gff for
MXO52514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2257-PB | 1..552 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:03 Download gff for
MXO52514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc-E2H-RA | 571..1129 | 1..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:52 Download gff for
MXO52514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcE2H-RA | 571..1129 | 1..561 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:52 Download gff for
MXO52514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8089309..8089867 | 1..561 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:03 Download gff for
MXO52514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7983342..7983900 | 1..561 | 98 | | Minus |
