MXO52515.5prime Sequence
666 bp (666 high quality bases) assembled on 2007-04-11
> MXO52515.5prime
CAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGTTCAAAGTT
GTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTCTCACGTTT
CACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGGCGTTGAGT
TTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAGCGCAAATC
TGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCTGCCTACTA
CCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAAGCATCTGA
CCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACCATGCCGAC
CAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTGCGGCACTT
GCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCGCAACGGCT
TGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTGAAACGGCA
TTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAGAAACAAAT
CAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGTGGAGCCCA
TCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGTGCTGTCAG
GCAAGCTTTCTAGACC
MXO52515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5771-PB | 645 | Rab11-RB | 1..642 | 9..650 | 3110 | 99.3 | Plus |
| CG5771-PA | 645 | Rab11-RA | 1..642 | 9..650 | 3110 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab11-RA | 1815 | CG5771-RA | 409..1050 | 9..650 | 3150 | 99.4 | Plus |
| Rab11-RB | 1627 | CG5771-RB | 221..862 | 9..650 | 3150 | 99.4 | Plus |
| Rab8-RC | 2043 | CG8287-RC | 751..843 | 194..286 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21114751..21115101 | 169..519 | 1725 | 99.4 | Plus |
| 3R | 32079331 | 3R | 21115248..21115381 | 517..650 | 655 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21113944..21114069 | 47..172 | 615 | 99.2 | Plus |
| 3R | 32079331 | 3R | 21111816..21111855 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:09 has no hits.
MXO52515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:54 Download gff for
MXO52515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5771-PA | 1..645 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:36 Download gff for
MXO52515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab11-RB | 214..862 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:03 Download gff for
MXO52515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab11-RB | 214..862 | 1..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:03 Download gff for
MXO52515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21111809..21111855 | 1..48 | 91 | -> | Plus |
| 3R | 21113946..21114067 | 49..170 | 99 | -> | Plus |
| 3R | 21114753..21115101 | 171..519 | 99 | -> | Plus |
| 3R | 21115251..21115381 | 520..650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:36 Download gff for
MXO52515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16937531..16937577 | 1..48 | 91 | -> | Plus |
| arm_3R | 16939668..16939789 | 49..170 | 99 | -> | Plus |
| arm_3R | 16940475..16940823 | 171..519 | 99 | -> | Plus |
| arm_3R | 16940973..16941103 | 520..650 | 99 | | Plus |
