MXO52516.5prime Sequence
893 bp (770 high quality bases) assembled on 2007-04-11
> MXO52516.5prime
CAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCAAGAAGACG
GAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTCGGGCTGAA
GAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGTGCAGAAGC
AGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACAAGCGCAAG
GAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCGCTGATCTT
CAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCCCAAGTCGG
TGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCGACAAGTGC
AAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAGCGGTCCAT
TTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTGGGACGATG
CCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAAAGCAACGT
CCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTGGAAAAATC
AAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTGCATCTACC
GTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGAAGAAGGAG
GACAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAGGAGCGCGC
TGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTTCCTCGCCT
GGAAGAAGCGCAAGATTGCCGAGAAGAAGGCCAAGCTGGCTGCCGAGGAA
GAGCGCAAGAAGAGTGACTTCAGCAGGGGCAAACAGTTCGGCATCTCTGG
TCGCGAAATGTTCAGCTTCAATCCGGATCTGGTCGACGACGGA
MXO52516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8635-PA | 1215 | CG8635-RA | 1..885 | 9..893 | 4375 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8635-RB | 1447 | CG8635-RB | 134..1018 | 9..893 | 4395 | 99.8 | Plus |
| CG8635-RA | 1572 | CG8635-RA | 259..1143 | 9..893 | 4395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8631072..8631508 | 515..79 | 2185 | 100 | Minus |
| 2R | 25286936 | 2R | 8630636..8631013 | 893..516 | 1860 | 99.5 | Minus |
| 2R | 25286936 | 2R | 8631632..8631704 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:01 has no hits.
MXO52516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:54 Download gff for
MXO52516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-PA | 1..884 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:01 Download gff for
MXO52516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1142 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:28 Download gff for
MXO52516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1142 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:28 Download gff for
MXO52516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8630637..8631013 | 516..892 | 99 | <- | Minus |
| 2R | 8631072..8631506 | 81..515 | 100 | <- | Minus |
| 2R | 8631633..8631704 | 9..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:01 Download gff for
MXO52516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4518142..4518518 | 516..892 | 99 | <- | Minus |
| arm_2R | 4518577..4519011 | 81..515 | 100 | <- | Minus |
| arm_2R | 4519138..4519209 | 9..80 | 100 | | Minus |
