MXO52519.5prime Sequence
858 bp (769 high quality bases) assembled on 2007-04-11
> MXO52519.5prime
CAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCGAGGTGGGG
GACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGGCCCATAGG
ATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTATCACCCAGC
AAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATGTAACCCAT
GCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTTAACCATAA
AAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAACTTGGAAG
AGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTAATCTCTGC
CAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTATTTGCTTTA
TCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAATTATTCACA
GAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCACTCTAAAA
ATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTTATGATGAC
TCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCATTTTGGGCA
TGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCATTATGGGC
GAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCATATAGATCA
GTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTCGTTTATGC
AACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTCCTAGATAC
ACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTTGTTTCCAAATGA
TAATAATC
MXO52519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5680-PB | 1119 | bsk-RB | 1..850 | 9..858 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bsk-RE | 1655 | CG5680-RE | 391..1240 | 9..858 | 4250 | 100 | Plus |
| bsk-RF | 1797 | CG5680-RF | 533..1382 | 9..858 | 4250 | 100 | Plus |
| bsk-RB | 1535 | CG5680-RB | 271..1120 | 9..858 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10248197..10248461 | 717..453 | 1325 | 100 | Minus |
| 2L | 23513712 | 2L | 10248524..10248722 | 453..255 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 10247995..10248136 | 858..717 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 10248785..10248915 | 254..124 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 10249095..10249210 | 124..9 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:59 has no hits.
MXO52519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:55 Download gff for
MXO52519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5680-PB | 1..850 | 9..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:44 Download gff for
MXO52519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsk-RB | 262..1120 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:15 Download gff for
MXO52519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsk-RB | 262..1120 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:15 Download gff for
MXO52519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10247995..10248135 | 718..858 | 100 | <- | Minus |
| 2L | 10248197..10248461 | 453..717 | 100 | <- | Minus |
| 2L | 10248525..10248722 | 255..452 | 100 | <- | Minus |
| 2L | 10248785..10248914 | 125..254 | 100 | <- | Minus |
| 2L | 10249095..10249219 | 1..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:44 Download gff for
MXO52519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10247995..10248135 | 718..858 | 100 | <- | Minus |
| arm_2L | 10248197..10248461 | 453..717 | 100 | <- | Minus |
| arm_2L | 10248525..10248722 | 255..452 | 100 | <- | Minus |
| arm_2L | 10248785..10248914 | 125..254 | 100 | <- | Minus |
| arm_2L | 10249095..10249219 | 1..124 | 97 | | Minus |
