MXO52520.5prime Sequence
838 bp (344 high quality bases) assembled on 2007-04-11
> MXO52520.5prime
CAATCGACATGTCCTCGTCGTCTACGTCCGGCGGCCGGACCAGCCCACTG
CTGTGTCGCGCATGAATCAGGACTATATGCGCCTCAGGCGGGATCCCCTG
CCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGAGTGGCACTA
CTGCGTCAAGGGGCCGGAGGACTCGCCCTACTAGGGCGGCTACTACCACG
GCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAACCGCCATCCATCTAC
ATGCTGACGCCGAACGGTCGCTTCAAGACCAACACCACACTGTGTTTGAG
TATATCATATTTTCATCCGGACACTTGGAACCCGACTTGGTGCGTACGCG
CCATTCTCACTGGACTGCTGATCTTCATGCTGGATAGCACACCCACACTC
GGATCCATCGAATCATCAAACTATGACAAGCAAATGTTTGCTCATAAATC
ACTATCATTTAACCTGCGCAACACCAACTTCTGTGAGCTGTTTCCGGAGA
TAGTCGAAGAGATCAAGCAGCGGCTGCGAAGAACACAGGCGGCAGCTGCT
GTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCCAACGGACTGGCCAA
CGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGCAGTGGGCGGCTTGC
CCAATCCACTGAATGCAGCAGGACGCAATCGATGGCGGGGCGGTGGGTCA
GGAGGATTTGGCCAGCGGCGGACGAGCGGCGGTCCAGAATACTGCACGGA
ACTCCTATCTACACTGGCAGTCTGTCTATTCAGACCTGGTGATCATTATC
TGCTTTGCAATTTTTGCACTCATTGTTATTTACGTGAT
MXO52520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 1..830 | 9..838 | 3375 | 96.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1372 | 8..838 | 3690 | 96.4 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1433 | 8..838 | 3690 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532742..17533200 | 838..379 | 2010 | 96.3 | Minus |
| 3R | 32079331 | 3R | 17533624..17533924 | 307..8 | 1335 | 97 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 379..305 | 315 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:50 has no hits.
MXO52520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:56 Download gff for
MXO52520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..830 | 9..838 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:48 Download gff for
MXO52520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1433 | 1..838 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:18 Download gff for
MXO52520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1433 | 1..838 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:18 Download gff for
MXO52520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532742..17533199 | 380..838 | 96 | <- | Minus |
| 3R | 17533260..17533330 | 309..379 | 95 | <- | Minus |
| 3R | 17533623..17533930 | 1..308 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:48 Download gff for
MXO52520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358464..13358921 | 380..838 | 96 | <- | Minus |
| arm_3R | 13358982..13359052 | 309..379 | 95 | <- | Minus |
| arm_3R | 13359345..13359652 | 1..308 | 95 | | Minus |
