MXO52521.5prime Sequence
884 bp (795 high quality bases) assembled on 2007-04-11
> MXO52521.5prime
CAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGTTCGTAAAC
GAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTGGCGCAGGC
TGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCAGCAGCGTG
GTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAACGCGCCAAA
AGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAAAGGGAGGC
CACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCTCGTGCTAA
ACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCTTCGTTGCC
TTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTGCCCGCCGA
GTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATCCATCTACA
GCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTAGCGATGCC
CTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCCAACGCGCT
GGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGACTACTTAT
CCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACACCCGCCGAA
AATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGCGATGATGA
CTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCAGTACTTGC
TATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGAATGACGAG
AAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGACTTTTTCGA
GTTTACCGCAGGGATTGCGTGTCAGTACCACAAG
MXO52521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11254-PA | 1380 | mael-RA | 1..873 | 9..881 | 4365 | 100 | Plus |
| CG11254-PB | 1380 | mael-RB | 1..873 | 9..881 | 4365 | 100 | Plus |
| CG11254-PC | 1389 | mael-RC | 128..882 | 127..881 | 3775 | 100 | Plus |
| CG11254-PC | 1389 | mael-RC | 1..120 | 9..128 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mael-RD | 2143 | CG11254-RD | 647..1519 | 9..881 | 4365 | 100 | Plus |
| mael-RB | 1830 | CG11254-RB | 334..1206 | 9..881 | 4365 | 100 | Plus |
| mael-RA | 1759 | CG11254-RA | 263..1135 | 9..881 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22724985..22725542 | 318..875 | 2790 | 100 | Plus |
| 3L | 28110227 | 3L | 22724738..22724929 | 127..318 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 22724566..22724685 | 9..128 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:52 has no hits.
MXO52521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:56 Download gff for
MXO52521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11254-PB | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:34 Download gff for
MXO52521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 255..1138 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:17 Download gff for
MXO52521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 255..1138 | 1..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:17 Download gff for
MXO52521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22724558..22724685 | 1..128 | 96 | -> | Plus |
| 3L | 22724740..22724929 | 129..318 | 100 | -> | Plus |
| 3L | 22724986..22725542 | 319..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:34 Download gff for
MXO52521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22717658..22717785 | 1..128 | 96 | -> | Plus |
| arm_3L | 22717840..22718029 | 129..318 | 100 | -> | Plus |
| arm_3L | 22718086..22718642 | 319..875 | 100 | | Plus |
