MXO52523.5prime Sequence
875 bp (782 high quality bases) assembled on 2007-04-11
> MXO52523.5prime
CAGTCGACATGACGCAAATGTCGCAGGACGAAATCATAACCAATACGAAA
ACAGTCCTTCAAGGCCTCGAAGCCTTGCGAGTGGAGCATGTTTCGATTAT
GAACGGAATCGCCGAGGTGCAGAAGGACAATGAAAAGTCGGACATGCTGC
GAAAGAACATCGAGAACATCGAACTGGGCCTCAGCGAGGCCCAGGTGATG
ATGGCCCTGACATCCCATCTGCAGAACATCGAGGCCGAGAAGCACAAGCT
TAAGACACAGGTGCGCCGCCTCCACCAGGAGAACGCCTGGCTTCGCGACG
AGCTGGCCAACACTCAGCAAAAGTTCCAGGCATCCGAGCAGCTGGTGGCC
CAACTAGAGGAGGAGAAGAAGCACCTGGAGTTCATGGCGTCCGTGAAGAA
GTACGACGAGAATCAGGAGCAGGACGACGCTTGCGACAAGTCCCGCACCG
ATCCCGTGGTCGAGCTATTCCCGGACGAGGAAAACGAGGACAGACACAAC
ATGTCGCCCACTCCGCCCAGCCAGTTCGCCAACCAGACTTCCGGCTACGA
GATTCCAGCGCGTCTCCGTACTCTGCACAACCTGGTCATTCAGTATGCAT
CGCAGGGAAGATACGAGGTAGCCGTTCCCCTCTGCAAGCAAGCATTGGAA
GATCTCGAAAGGACAAGTGGTCACGACCATCCCGATGTAGCAACCATGCT
GAACATTTTGGCTCTCGTGTACCGCGATCAGAACAAGTATAAGGAGGCCG
CCAATTTACTCAACGACGCTCTGTCGATTCGAGGAAAGACACTGGGCGAG
AACCATCCAGCCGTGGCGGCCACGTTGAACAACTTGGCCGTCCTCTATGG
CAAACGTGGCAAGTACAAAGATGCC
MXO52523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5433-PA | 1527 | Klc-RA | 1..867 | 9..875 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Klc-RC | 1876 | CG5433-RC | 156..1022 | 9..875 | 4335 | 100 | Plus |
Klc-RB | 1841 | CG5433-RB | 118..984 | 9..875 | 4335 | 100 | Plus |
Klc-RA | 1843 | CG5433-RA | 120..986 | 9..875 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12748056..12748657 | 610..9 | 3010 | 100 | Minus |
3L | 28110227 | 3L | 12747611..12747757 | 875..729 | 735 | 100 | Minus |
3L | 28110227 | 3L | 12747821..12747943 | 731..609 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:36 has no hits.
MXO52523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:57 Download gff for
MXO52523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5433-PA | 1..867 | 9..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:40 Download gff for
MXO52523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Klc-RA | 113..986 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:32 Download gff for
MXO52523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Klc-RA | 113..986 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:32 Download gff for
MXO52523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12747611..12747754 | 732..875 | 100 | <- | Minus |
3L | 12747821..12747941 | 611..731 | 100 | <- | Minus |
3L | 12748056..12748664 | 1..610 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:40 Download gff for
MXO52523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12740921..12741041 | 611..731 | 100 | <- | Minus |
arm_3L | 12740711..12740854 | 732..875 | 100 | <- | Minus |
arm_3L | 12741156..12741764 | 1..610 | 99 | | Minus |