MXO52524.5prime Sequence
800 bp (761 high quality bases) assembled on 2007-04-11
> MXO52524.5prime
CAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCGGCGAGGTC
TTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTGTGCGAATA
CTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCCGGTGATAG
CCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGGTGTCTTTG
GTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATCGAGTTCCT
GCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTGCTCCGAGT
CCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGGACGAGATG
CTCGATAATGGCTTCCCACTGGCCACTTTTAGCACCCTCCTCAAGGAGCT
GATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGTGACGGGCA
AGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGGCGGTTCGC
TGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTACTTCGATGT
CATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCACGGTCTTTG
CCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCGGCATGCCA
GATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGACGTTTCCTT
CCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCTGCTCTCCT
TTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACATTAGCTCT
MXO52524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3035-PA | 1248 | cm-RA | 380..792 | 388..800 | 2065 | 100 | Plus |
| CG3035-PA | 1248 | cm-RA | 1..368 | 9..376 | 1840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 55..846 | 9..800 | 3870 | 99.2 | Plus |
| cm-RA | 1469 | CG3035-RA | 55..846 | 9..800 | 3870 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7010519..7010844 | 457..132 | 1540 | 98.2 | Minus |
| X | 23542271 | X | 7010044..7010226 | 800..618 | 915 | 100 | Minus |
| X | 23542271 | X | 7010283..7010442 | 617..458 | 800 | 100 | Minus |
| X | 23542271 | X | 7010899..7010988 | 132..43 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:44 has no hits.
MXO52524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:58 Download gff for
MXO52524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3035-PA | 1..792 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:42 Download gff for
MXO52524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..846 | 3..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:37 Download gff for
MXO52524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..846 | 3..800 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:37 Download gff for
MXO52524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7010044..7010226 | 618..800 | 100 | <- | Minus |
| X | 7010283..7010442 | 458..617 | 100 | <- | Minus |
| X | 7010519..7010844 | 132..457 | 98 | <- | Minus |
| X | 7010900..7010987 | 44..131 | 100 | <- | Minus |
| X | 7011057..7011099 | 3..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:42 Download gff for
MXO52524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6904077..6904259 | 618..800 | 100 | <- | Minus |
| arm_X | 6904316..6904475 | 458..617 | 100 | <- | Minus |
| arm_X | 6904552..6904877 | 132..457 | 98 | <- | Minus |
| arm_X | 6904933..6905020 | 44..131 | 100 | <- | Minus |
| arm_X | 6905090..6905132 | 3..43 | 93 | | Minus |
