MXO52527.5prime Sequence
869 bp (750 high quality bases) assembled on 2007-04-11
> MXO52527.5prime
CAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTGAATCCGAT
CCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGATGGGGCACA
GGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAACCTAGAGC
CCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGGATGAACCC
GCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCCAAGCAGGT
GATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCTGATGAACC
TGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATTTTAAGGAG
TTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTGAGCAACGC
TAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAACACTCTTCG
AGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACCACTTTGTC
GGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGCCTGAGGGA
GGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTGGATCGATG
TGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCGACGGCGAG
ATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGCATTTATGA
ACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTATGGACACTG
AGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACATAGAGTAC
GAGATTCAGAAAAAGAAGCGCTACAAAGTGGAGAATGTGCGGCGCAAGCA
CAACTATTTGCCCTTCATC
MXO52527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3431-PA | 975 | Uch-L3-RA | 1..861 | 9..869 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uch-L5-RB | 1153 | CG3431-RB | 117..979 | 7..869 | 4315 | 100 | Plus |
| Uch-L5-RA | 1394 | CG3431-RA | 117..979 | 7..869 | 4315 | 100 | Plus |
| Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 489..682 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9475908..9476693 | 869..84 | 3930 | 100 | Minus |
| 3L | 28110227 | 3L | 9476771..9476849 | 85..7 | 395 | 100 | Minus |
| X | 23542271 | X | 12055801..12055994 | 682..489 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:22 has no hits.
MXO52527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:58 Download gff for
MXO52527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3431-PA | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:58 Download gff for
MXO52527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..979 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:02 Download gff for
MXO52527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..979 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:02 Download gff for
MXO52527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9475908..9476692 | 85..869 | 100 | <- | Minus |
| 3L | 9476772..9476853 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:58 Download gff for
MXO52527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9469008..9469792 | 85..869 | 100 | <- | Minus |
| arm_3L | 9469872..9469953 | 1..84 | 95 | | Minus |
