MXO52528.5prime Sequence
879 bp (651 high quality bases) assembled on 2007-04-11
> MXO52528.5prime
CAGTCGACATGACTAGCTGCGTGCCAGCGCATCAGCAAAAGGACCAGGAG
CAGTTGCTAAAGGAACTGGCCAGCAGTGGCGACGAGATGGACGACCCGGA
CGATCCGGACCAGGAACACCACCAGCTGGTAGAGCCGACCTTCTCTTTTT
CGAATAGTAACACCTGCTGGGTGTGCAACGGCTACTATGGGCCCAACTTC
GGGGAGCCGTTGTGCGGCGCCTGCCACGCCTTCCTGTACAACGCACAGCG
GGCGGAGGAGCTGCTCACGGAGCTTTCCGATGACGAGGATTCTGGGAACG
ACGAGCCGCCGTTCAAGGACAAGCAGGAAGACGAGGAGACCGAAAACGAC
GTAGACATCATGGGCTTTGAGGATCTGTTTGACCCCCCCCCGGCAGCCGT
GCCACAACATCCAAATCCGCAGCCACCAATGGAGCCACAGGATCAACAGC
CAGCCCAACCAGTTATAGATCTGCCACAGCCGGTGCCGGAGGCTGCGGCA
CCACGACGCGAGTCTCCGGAGCGCGACTTTGAGCACGAGAGAGCCATTAA
TCCCTTCCTGCTGCCCATTAAGCGTCCGCGGGCCACGGCTCCCTTGGCTC
TGCCCCATTACATGCATGAGCTGGCCGATGGAAGGGCGCGAGTGCATGAA
TACAACGCCGCCAGCGGAAGCGGAGCAAGTGGCAGCAGCAGACACATTGT
CAACATAATACCCGTCGAGGTGATGCTGAGAATATTTGCCTATTTGGACG
ACATGTCGCTGTGGATGGCTAGTGAAGTTTGCAAGCAATGGCACGACATT
GTCGGGAAAACACGGCCCAGAGCATGTGGAAGGCGTATATCAAGCAGCGC
TGGCCGCTGTTCGACAGTTTGGCAGACAA
MXO52528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15437-PA | 1476 | morgue-RA | 382..872 | 390..879 | 2365 | 99.3 | Plus |
| CG15437-PA | 1476 | morgue-RA | 1..369 | 9..377 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 74..945 | 9..879 | 4230 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443674..4444402 | 879..152 | 3490 | 98.9 | Minus |
| 2L | 23513712 | 2L | 4444464..4444607 | 152..9 | 720 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 11081..11134 | 645..698 | 108 | 66.7 | Plus |
MXO52528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:59 Download gff for
MXO52528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 1..870 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:04 Download gff for
MXO52528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 67..943 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:29 Download gff for
MXO52528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 67..943 | 1..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:29 Download gff for
MXO52528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4444464..4444614 | 1..152 | 97 | | Minus |
| 2L | 4443676..4444401 | 153..877 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:04 Download gff for
MXO52528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4443676..4444401 | 153..877 | 98 | <- | Minus |
| arm_2L | 4444464..4444614 | 1..152 | 97 | | Minus |
