MXO52529.5prime Sequence
872 bp (763 high quality bases) assembled on 2007-04-11
> MXO52529.5prime
CAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCGATCTGGTG
ACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAGGCACTGCG
TCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAAATATGAGG
CACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCCTGCAGTAT
TTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGCAAAAAGAA
ACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAAGGACAAAA
AGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGAAGAAGCTG
CAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAACCCAAAGGTTCAGTG
GTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAAGGAGGCCG
TTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGCGGATTCCG
TGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAATCCTATCT
GGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTTCTCGGTGT
CCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGAAGCTGGTC
AAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATTATCTTCAT
TGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGAGAACGACA
GCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGGGCGTGGGC
AATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATACCGTGGGT
CCTCGACTCGGCCATTCGCCGT
MXO52529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6842-PA | 1329 | CG6842-RA | 1..864 | 9..872 | 4295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps4-RB | 2411 | CG6842-RB | 164..1028 | 8..872 | 4310 | 99.9 | Plus |
| Vps4-RA | 2031 | CG6842-RA | 164..1028 | 8..872 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17908808..17909535 | 145..872 | 3625 | 99.9 | Plus |
| X | 23542271 | X | 17908577..17908713 | 8..144 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:08 has no hits.
MXO52529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:59 Download gff for
MXO52529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6842-PA | 1..864 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:50 Download gff for
MXO52529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps4-RA | 157..1028 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:21 Download gff for
MXO52529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps4-RA | 157..1028 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:21 Download gff for
MXO52529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17908571..17908713 | 1..144 | 97 | -> | Plus |
| X | 17908808..17909535 | 145..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:50 Download gff for
MXO52529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17802604..17802746 | 1..144 | 97 | -> | Plus |
| arm_X | 17802841..17803568 | 145..872 | 99 | | Plus |
