MXO52530.5prime Sequence
705 bp (705 high quality bases) assembled on 2007-04-11
> MXO52530.5prime
CAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCGAGGTTTTG
ACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCGGTAACTGA
CGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCGTCCCGTAA
AGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGAAGCACCGC
GCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCATCCCGAGGA
TCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAACCGTCGCCC
TGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACCGCGGAGTA
CTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAGGAACGCGG
ACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGAGGCCTTGG
CTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGATCCACCAC
TTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTGGATGGCCG
CAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGACTTTTGTGA
AGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATCCCAACGAA
GTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAAGCAAGCTTTCT
AGACC
MXO52530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4265-PA | 684 | Uch-RA | 1..681 | 9..689 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uch-RB | 1044 | CG4265-RB | 129..809 | 9..689 | 3405 | 100 | Plus |
| Uch-RA | 1196 | CG4265-RA | 281..961 | 9..689 | 3405 | 100 | Plus |
| Uch-RC | 1035 | CG4265-RC | 129..800 | 9..689 | 3260 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2212973..2213333 | 689..329 | 1805 | 100 | Minus |
| 2L | 23513712 | 2L | 2213415..2213557 | 328..186 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 2213616..2213758 | 185..43 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 2213894..2213931 | 46..9 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:24 has no hits.
MXO52530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:00 Download gff for
MXO52530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4265-PA | 1..684 | 9..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:43 Download gff for
MXO52530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-RA | 281..961 | 9..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:17 Download gff for
MXO52530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-RA | 281..961 | 9..689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:17 Download gff for
MXO52530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2212973..2213333 | 329..689 | 100 | <- | Minus |
| 2L | 2213415..2213557 | 186..328 | 100 | <- | Minus |
| 2L | 2213616..2213756 | 45..185 | 100 | <- | Minus |
| 2L | 2213896..2213931 | 9..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:43 Download gff for
MXO52530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2212973..2213333 | 329..689 | 100 | <- | Minus |
| arm_2L | 2213415..2213557 | 186..328 | 100 | <- | Minus |
| arm_2L | 2213616..2213756 | 45..185 | 100 | <- | Minus |
| arm_2L | 2213896..2213931 | 9..44 | 100 | | Minus |
