MXO52531.5prime Sequence
756 bp (756 high quality bases) assembled on 2007-04-11
> MXO52531.5prime
CAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATGACAAGTTG
CTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAATACAAAAT
GATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAGCTATGCTA
ACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCTTGTATGCG
GAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTTCCCGACGA
CAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCATCCCCATG
TGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCCCGGAGTGG
CGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTGCAAGTCAT
TTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGATAAGCTCA
AAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGGAGTATGTT
GCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATATTTGACAC
CCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTTCCAGCAGG
ACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAAGCAAGCTG
ACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACTGGTCTGTC
ATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGGCAAGCTTTC
TAGACC
MXO52531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10536-PB | 735 | cbx-RB | 1..732 | 9..740 | 3660 | 100 | Plus |
| CG10536-PA | 645 | cbx-RA | 1..642 | 99..740 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbx-RB | 908 | CG10536-RB | 94..825 | 9..740 | 3660 | 100 | Plus |
| cbx-RA | 1036 | CG10536-RA | 253..953 | 40..740 | 3505 | 100 | Plus |
| cbx-RC | 766 | CG10536-RC | 72..456 | 36..438 | 1735 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864593..9865070 | 740..263 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9865124..9865227 | 263..160 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 9865424..9865509 | 94..9 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 9865290..9865354 | 159..95 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:55 has no hits.
MXO52531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:00 Download gff for
MXO52531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10536-PB | 1..735 | 9..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:37 Download gff for
MXO52531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 86..828 | 1..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:50 Download gff for
MXO52531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 86..828 | 1..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:50 Download gff for
MXO52531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864589..9865069 | 264..744 | 99 | <- | Minus |
| 2R | 9865124..9865227 | 160..263 | 100 | <- | Minus |
| 2R | 9865290..9865354 | 95..159 | 100 | <- | Minus |
| 2R | 9865424..9865517 | 1..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:37 Download gff for
MXO52531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5752094..5752574 | 264..744 | 99 | <- | Minus |
| arm_2R | 5752629..5752732 | 160..263 | 100 | <- | Minus |
| arm_2R | 5752795..5752859 | 95..159 | 100 | <- | Minus |
| arm_2R | 5752929..5753022 | 1..94 | 95 | | Minus |
