MXO52532.5prime Sequence
726 bp (726 high quality bases) assembled on 2007-04-11
> MXO52532.5prime
CAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCACGTTCAGT
CCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCCGTATCTGG
CGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGTCATTGCCA
CAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTGTACATCGC
GTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGAATGGGTCC
GGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCAGACGTACT
ACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGCAGCGCGTG
GCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGTCCCTTTGG
CGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTATCTCTACC
AATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTGCCATGGGC
AAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTACAGCGAAGA
TCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCTGAAAGAAG
GTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAATCTGCGAT
CAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGACTACTTGGC
CAGCATCCCCGCAAGCTTTCTAGACC
MXO52532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 1..702 | 9..710 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 9..710 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 124..382 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 12432286..12432458 | 538..710 | 865 | 100 | Plus |
3R | 32079331 | 3R | 12432066..12432222 | 382..538 | 785 | 100 | Plus |
3R | 32079331 | 3R | 12431581..12431660 | 47..126 | 400 | 100 | Plus |
3R | 32079331 | 3R | 12431441..12431481 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:28 has no hits.
MXO52532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:01 Download gff for
MXO52532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:01 Download gff for
MXO52532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:06 Download gff for
MXO52532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 1..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:06 Download gff for
MXO52532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432067..12432222 | 383..538 | 100 | -> | Plus |
3R | 12432287..12432465 | 539..718 | 98 | | Plus |
3R | 12431433..12431481 | 1..49 | 91 | -> | Plus |
3R | 12431584..12431660 | 50..126 | 100 | -> | Plus |
3R | 12431746..12432001 | 127..382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:01 Download gff for
MXO52532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257306..8257382 | 50..126 | 100 | -> | Plus |
arm_3R | 8257155..8257203 | 1..49 | 91 | -> | Plus |
arm_3R | 8257468..8257723 | 127..382 | 100 | -> | Plus |
arm_3R | 8257789..8257944 | 383..538 | 100 | -> | Plus |
arm_3R | 8258009..8258187 | 539..718 | 98 | | Plus |