MXO52533.5prime Sequence
900 bp (844 high quality bases) assembled on 2007-04-11
> MXO52533.5prime
CAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGGAGATCGTG
AGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCCGAAGACTT
GTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAAGTACAACC
AGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCGCCTCGGCC
AATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATACAGGTGGA
CGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGATTGCCATTG
TCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGCAAAAACTT
GACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATCAAGCCGCA
GCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTACGTAAAGG
CCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACCAGCTGTCC
AAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGGCTGCAGCC
GGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCACTTTCCTGC
AGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGAGAGAGCAC
AAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAATTTCCTGCA
AAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACAGTGCATCC
TTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCGGCCACATC
TTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGATGAGTGCCC
CTTGTGCCGGGAGTCGCTGAAAAAGTCCCAAGTGATATTACTGCAAAACT
MXO52533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7864-PA | 900 | CG7864-RA | 1..892 | 9..900 | 4435 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 1028 | CG7864-RB | 47..942 | 5..900 | 4465 | 99.9 | Plus |
| Pex10-RA | 1487 | CG7864-RA | 506..1401 | 5..900 | 4465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1559158..1559777 | 281..900 | 3100 | 100 | Plus |
| 3L | 28110227 | 3L | 1558828..1559104 | 5..281 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:00 has no hits.
MXO52533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:01 Download gff for
MXO52533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-PA | 1..892 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:52 Download gff for
MXO52533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1401 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:22 Download gff for
MXO52533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1401 | 1..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:22 Download gff for
MXO52533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1558825..1559104 | 1..281 | 98 | -> | Plus |
| 3L | 1559159..1559777 | 282..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:52 Download gff for
MXO52533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1558825..1559104 | 1..281 | 98 | -> | Plus |
| arm_3L | 1559159..1559777 | 282..900 | 100 | | Plus |
