MXO52534.5prime Sequence
573 bp (573 high quality bases) assembled on 2007-04-11
> MXO52534.5prime
CAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCACCCAATGCC
GGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGCGGACCACA
CAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGACGCAGGCGC
AGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGAAGGTGCTG
GAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGATGCCTTGCA
GCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAAGAGGAAAT
TCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGATTGGCCTG
GTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGCGGGGAGCA
GCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACCGCCGCCGC
CACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATGCGGCAGGA
GCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGCGATCACGG
CGGCGTGGCAAGCTTTCTAGACC
MXO52534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17248-PA | 552 | n-syb-RA | 1..549 | 9..557 | 2745 | 100 | Plus |
| CG17248-PC | 552 | n-syb-RC | 1..549 | 9..557 | 2745 | 100 | Plus |
| CG17248-PE | 579 | n-syb-RE | 30..576 | 11..557 | 2735 | 100 | Plus |
| CG17248-PB | 579 | n-syb-RB | 30..576 | 11..557 | 2735 | 100 | Plus |
| CG17248-PD | 666 | n-syb-RD | 30..392 | 11..373 | 1815 | 100 | Plus |
| CG17248-PD | 666 | n-syb-RD | 479..663 | 373..557 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nSyb-RF | 1109 | CG17248-RF | 483..1032 | 8..557 | 2750 | 100 | Plus |
| nSyb-RA | 1387 | CG17248-RA | 480..1029 | 8..557 | 2750 | 100 | Plus |
| nSyb-RG | 3027 | CG17248-RG | 559..1105 | 11..557 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1632270..1632454 | 557..373 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 1635301..1635461 | 320..160 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 1635532..1635684 | 163..11 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 10250908..10251119 | 343..132 | 295 | 75.9 | Minus |
| 3L | 28110227 | 3L | 1635182..1635239 | 376..319 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:27 has no hits.
MXO52534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:02 Download gff for
MXO52534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17248-PC | 1..552 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:45 Download gff for
MXO52534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RA | 474..1038 | 1..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:19 Download gff for
MXO52534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nSyb-RA | 474..1038 | 1..567 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:19 Download gff for
MXO52534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1635301..1635459 | 162..320 | 100 | <- | Minus |
| 3L | 1635534..1635690 | 1..161 | 96 | | Minus |
| 3L | 1632261..1632454 | 373..567 | 97 | <- | Minus |
| 3L | 1635186..1635237 | 321..372 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:45 Download gff for
MXO52534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1632261..1632454 | 373..567 | 97 | <- | Minus |
| arm_3L | 1635186..1635237 | 321..372 | 100 | <- | Minus |
| arm_3L | 1635301..1635459 | 162..320 | 100 | <- | Minus |
| arm_3L | 1635534..1635690 | 1..161 | 96 | | Minus |
