MXO52536.5prime Sequence
615 bp (615 high quality bases) assembled on 2007-04-11
> MXO52536.5prime
CAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCGGGGAAAGC
GGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAACAAGTTCGA
CCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAAAGTGATGC
AGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGGCGGGCGCC
GAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCTCTGGGCGC
CATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAAGCTGGAAA
CCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACATTGCCATC
ATTGTGGTAGGCAACAAGATCGACGAGGATCTAGTTGTGGATCGCGAGGA
GGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGAGACCTCAG
CCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGGTGGAGAAG
ATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCCGGTCTGGA
CATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTGTTACTGTG
CAAGCTTTCTAGACC
MXO52536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3129-PA | 594 | Rab-RP4-RA | 1..591 | 9..599 | 2905 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab18-RA | 833 | CG3129-RA | 152..742 | 9..599 | 2925 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5671081..5671515 | 500..66 | 2145 | 99.5 | Minus |
| X | 23542271 | X | 5670918..5671018 | 599..499 | 505 | 100 | Minus |
| X | 23542271 | X | 5671603..5671661 | 67..9 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:25 has no hits.
MXO52536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:02 Download gff for
MXO52536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3129-PA | 1..594 | 9..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:22 Download gff for
MXO52536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 1..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:04 Download gff for
MXO52536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 1..599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:04 Download gff for
MXO52536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5670918..5671016 | 501..599 | 100 | <- | Minus |
| X | 5671081..5671513 | 68..500 | 99 | <- | Minus |
| X | 5671603..5671665 | 1..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:22 Download gff for
MXO52536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5564951..5565049 | 501..599 | 100 | <- | Minus |
| arm_X | 5565114..5565546 | 68..500 | 99 | <- | Minus |
| arm_X | 5565636..5565698 | 1..67 | 94 | | Minus |
