MXO52538.5prime Sequence
827 bp (715 high quality bases) assembled on 2007-04-11
> MXO52538.5prime
CAGTCGACATGGAATACAAACCCGTGCCCACGGTTAAGGACGCAGCTCCC
TTCGACGCCTCCCAGGACGCCCAGGTGCTGCGGGCGGCGATGAAGGGATT
CGGCACCGACGAGCAGGAAATCATCGACGTGCTCGTCGGCAGGAGCAACC
AGCAGAGGCAGACGATCAAGGCGGTTTACGAAGCGGAGTTCGAGCGCGAC
CTGGTGGACGATCTTAAGGACGAGCTGGGAGGCAAGTTCGAGGACGTGAT
CGTGGGTCTAATGATGCCACCAGTGGAGTACCTGTGCAAGCAACTGCACG
CCGCCATGGCGGGCATCGGAACCGAGGAGGCCACGCTCGTCGAGATCCTG
TGCACCAAGACCAACGAGGAGATGGCCCATATCGTGGCCGTCTACGAGGA
GCGCTACCAGCGCCCGCTGGCCGAGCAGATGTGCAGCGAGACCTCCGGCT
TTTTCCGCCGCCTGCTCACGCTGATCGTGACCGGAGTACGTGACGGACTG
GACACGCCCGTCGACGTCGGTCAGGCCAAGGAGCAGGCCGCCCAGCTCTA
CTCGGCCGGCGAGGCCAAGCTGGGAACGGACGAGGAGGTCTTCAACCGGA
TCATGTCGCACGCCAGCTTCCCGCAGCTGCGACTCGTCTTCGAGGAGTAC
AAGGTGCTCTCCGGGCAGACCATCGAGCAGGCCATCAAGCACGAGATGTC
CGACGAGCTGCACGAGGCCATGATGGCCCTAGTTGAGTGCGTCCAGTCAC
CGGCGGCCTTCTTCGCCAACCGCCTGTACAAGGCCATGAATGGCGCCGGC
ACCGATGACGCCACGCTCATCCGCATC
MXO52538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9579-PA | 963 | AnnX-RA | 1..819 | 9..827 | 4045 | 99.7 | Plus |
| CG33487-PA | 369 | CG33487-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
| CG33496-PA | 369 | CG33496-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
| CG33498-PA | 366 | CG33498-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
| CG33491-PA | 369 | CG33491-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB10-RB | 1247 | CG9579-RB | 135..953 | 9..827 | 4065 | 99.8 | Plus |
| AnxB10-RA | 1244 | CG9579-RA | 135..953 | 9..827 | 4065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20172305..20173016 | 732..21 | 3530 | 99.7 | Minus |
| X | 23542271 | X | 20187343..20187594 | 732..481 | 1215 | 98.8 | Minus |
| X | 23542271 | X | 20179468..20179717 | 732..483 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 20195077..20195326 | 732..483 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 20202793..20203042 | 732..483 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 20210463..20210712 | 732..483 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 20218115..20218364 | 732..483 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 20225850..20226099 | 732..483 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 20172128..20172225 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20179291..20179388 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20187166..20187263 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20194896..20194993 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20202612..20202709 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20210282..20210379 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20217938..20218035 | 827..730 | 490 | 100 | Minus |
| X | 23542271 | X | 20225673..20225770 | 827..730 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:32 has no hits.
MXO52538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:03 Download gff for
MXO52538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9579-PA | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:26 Download gff for
MXO52538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB10-RA | 131..953 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:09 Download gff for
MXO52538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB10-RA | 131..953 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:09 Download gff for
MXO52538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20172128..20172222 | 733..827 | 100 | <- | Minus |
| X | 20172305..20173016 | 21..732 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:26 Download gff for
MXO52538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20066161..20066255 | 733..827 | 100 | <- | Minus |
| arm_X | 20066338..20067049 | 21..732 | 99 | <- | Minus |
