MXO52540.5prime Sequence
567 bp (567 high quality bases) assembled on 2007-04-11
> MXO52540.5prime
CAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGAAAGACGGC
GAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAGCTGCGCAT
ACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGCCACAGACT
TTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCTCGCCCGAC
GAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGCGTCGGATC
CAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCAGGTGTACC
ATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTCTGCGCGAG
GACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGCTTGCAGTT
TCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGAGGCGGCCG
ACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAAAGAAGGCG
ATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGTCTGCTCAA
GGCAAGCTTTCTAGACC
MXO52540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7375-PA | 546 | CG7375-RA | 1..543 | 9..551 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UbcE2M-RC | 1729 | CG7375-RC | 291..833 | 9..551 | 2715 | 100 | Plus |
| UbcE2M-RB | 916 | CG7375-RB | 164..706 | 9..551 | 2715 | 100 | Plus |
| UbcE2M-RA | 913 | CG7375-RA | 161..703 | 9..551 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8197141..8197445 | 411..107 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 8196743..8196884 | 551..410 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 8197522..8197621 | 108..9 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:08 has no hits.
MXO52540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:04 Download gff for
MXO52540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7375-PA | 1..546 | 9..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:07 Download gff for
MXO52540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc12-RA | 154..703 | 1..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:33 Download gff for
MXO52540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcE2M-RA | 154..703 | 1..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:33 Download gff for
MXO52540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8196743..8196883 | 411..551 | 100 | <- | Minus |
| 3L | 8197142..8197443 | 109..410 | 100 | <- | Minus |
| 3L | 8197522..8197628 | 1..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:07 Download gff for
MXO52540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8189843..8189983 | 411..551 | 100 | <- | Minus |
| arm_3L | 8190242..8190543 | 109..410 | 100 | <- | Minus |
| arm_3L | 8190622..8190728 | 1..108 | 96 | | Minus |
