Clone MXO52542 Report

Search the DGRC for MXO52542

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:525
Well:42
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptAos1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52542.5prime Sequence

908 bp (791 high quality bases) assembled on 2007-04-11

> MXO52542.5prime
CAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCGTGGAGCTC
ACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTCTGGGGTCT
GGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGCTGGACTGT
GCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCGGAGTGAAC
TCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGACTTTTGTTC
ACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGCCGAAGCAT
CATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCTCCGCCGAC
CGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAGTTCGACGT
TGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCATTGACACCA
TTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGTGGGGCACC
TTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTCGAGGATGT
TATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAAGTATGAAA
CCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCTACTCTGCC
TGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAATTGAAGCG
CAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTTCCGCACAA
CCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACCTGGAATTG
CTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTGGGCGACGA
AGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGCTGTTGTCG
GCGGCGTT

MXO52542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12276-PA 1014 Aos1-RA 1..900 9..908 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 92..991 9..908 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12433128..12433558 545..115 2155 100 Minus
3R 32079331 3R 12432709..12433072 908..545 1820 100 Minus
3R 32079331 3R 12433625..12433731 115..9 535 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:55:19 has no hits.

MXO52542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:05 Download gff for MXO52542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12276-PA 1..900 9..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:44 Download gff for MXO52542.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..991 9..908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:10 Download gff for MXO52542.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..991 9..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:10 Download gff for MXO52542.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12432709..12433072 545..908 100 <- Minus
3R 12433129..12433557 116..544 100 <- Minus
3R 12433625..12433731 9..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:44 Download gff for MXO52542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258431..8258794 545..908 100 <- Minus
arm_3R 8258851..8259279 116..544 100 <- Minus
arm_3R 8259347..8259453 9..115 100   Minus