MXO52542.5prime Sequence
908 bp (791 high quality bases) assembled on 2007-04-11
> MXO52542.5prime
CAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCGTGGAGCTC
ACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTCTGGGGTCT
GGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGCTGGACTGT
GCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCGGAGTGAAC
TCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGACTTTTGTTC
ACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGCCGAAGCAT
CATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCTCCGCCGAC
CGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAGTTCGACGT
TGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCATTGACACCA
TTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGTGGGGCACC
TTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTCGAGGATGT
TATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAAGTATGAAA
CCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCTACTCTGCC
TGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAATTGAAGCG
CAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTTCCGCACAA
CCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACCTGGAATTG
CTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTGGGCGACGA
AGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGCTGTTGTCG
GCGGCGTT
MXO52542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12276-PA | 1014 | Aos1-RA | 1..900 | 9..908 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 92..991 | 9..908 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12433128..12433558 | 545..115 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 12432709..12433072 | 908..545 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 12433625..12433731 | 115..9 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:55:19 has no hits.
MXO52542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:05 Download gff for
MXO52542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12276-PA | 1..900 | 9..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:44 Download gff for
MXO52542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..991 | 9..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:10 Download gff for
MXO52542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..991 | 9..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:10 Download gff for
MXO52542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432709..12433072 | 545..908 | 100 | <- | Minus |
3R | 12433129..12433557 | 116..544 | 100 | <- | Minus |
3R | 12433625..12433731 | 9..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:44 Download gff for
MXO52542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258431..8258794 | 545..908 | 100 | <- | Minus |
arm_3R | 8258851..8259279 | 116..544 | 100 | <- | Minus |
arm_3R | 8259347..8259453 | 9..115 | 100 | | Minus |