MXO52544.5prime Sequence
573 bp (573 high quality bases) assembled on 2007-04-11
> MXO52544.5prime
CAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCAAGCTGGGC
GACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAGCGCTTCGA
CTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCGTCACGAGC
TGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAACGACAAAC
TCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTCTCCGACAT
TAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCTGAAGCTGC
GTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGAAAACCGTC
GACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCGGACACAAA
GAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAAGGGCGTCA
ATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCCTGACCGTG
GACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATTCCCATTGC
GCACAAGGCAAGCTTTCTAGACC
MXO52544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14207-PA | 552 | CG14207-RA | 1..549 | 9..557 | 2745 | 100 | Plus |
| CG14207-PB | 579 | CG14207-RB | 202..576 | 183..557 | 1875 | 100 | Plus |
| CG14207-PB | 579 | CG14207-RB | 1..182 | 9..190 | 910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14207-RD | 1380 | CG14207-RD | 306..854 | 9..557 | 2745 | 100 | Plus |
| CG14207-RA | 1240 | CG14207-RA | 306..854 | 9..557 | 2745 | 100 | Plus |
| CG14207-RC | 753 | CG14207-RC | 110..487 | 180..557 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19610695..19610887 | 365..557 | 965 | 100 | Plus |
| X | 23542271 | X | 19605504..19605682 | 9..187 | 895 | 100 | Plus |
| X | 23542271 | X | 19610525..19610625 | 267..367 | 505 | 100 | Plus |
| X | 23542271 | X | 19610378..19610463 | 185..270 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:30 has no hits.
MXO52544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:05 Download gff for
MXO52544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-PA | 1..552 | 9..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:47 Download gff for
MXO52544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-RA | 296..859 | 1..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:21 Download gff for
MXO52544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-RA | 296..859 | 1..562 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:21 Download gff for
MXO52544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19605494..19605682 | 1..187 | 97 | -> | Plus |
| X | 19610381..19610462 | 188..269 | 100 | -> | Plus |
| X | 19610528..19610623 | 270..365 | 100 | -> | Plus |
| X | 19610696..19610892 | 366..562 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:47 Download gff for
MXO52544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19499527..19499715 | 1..187 | 97 | -> | Plus |
| arm_X | 19504414..19504495 | 188..269 | 100 | -> | Plus |
| arm_X | 19504561..19504656 | 270..365 | 100 | -> | Plus |
| arm_X | 19504729..19504925 | 366..562 | 98 | | Plus |
