MXO52548.5prime Sequence
756 bp (750 high quality bases) assembled on 2007-04-11
> MXO52548.5prime
CAGTCGACATGTCTCGCGGAAGTTCCGCCGGCTTTGACAGACACATCACG
ATCTTCTCTCCGGAGGGACGCCTCTACCAAGTGGAGTACGCCTTCAAGGC
TATTGCCCAGGAGAACATCACCACGGTGGCGCTGAAGAGTGGCGACTGTG
CCGTGGTGGCCACCCAAAAAAAAGTGACCGAGAAGAACATCGTGCCTGAA
ACGGTGACCCACCTGTTCCGCATCACCAAGGACATTGGATGCGCAATGAC
CGGACGCATAGCTGATTCCCGCTCACAGGTGCAGAAGGCCAGATACGAGG
CCGCCAACTTCCGCTACAAGTACGGCTACGAAATGCCCGTGGATGTGCTG
TGTCGTCGAATTGCGGATATCAACCAGGTGTTCACGCACAATGCCGAGAT
GCGTCCGCTCGGCTGCAGCATGGTGCTGATCGCTTACGACAATGAAATCG
GCCCCAGCGTTTACAAGACGGACCCGGCTGGCTACTTCAGCGGGTTCAAG
GCCTGCAGCGTGGGTGCCAAGACTCTGGAGGCCAACAGCTATCTGGAAAA
GAAGTACAAGCCCAACTTGTCGGAGGAGAAAGCGATCCAGCTGGCCATCT
CCTGTCTGTCCAGTGTGCTCGCTATAGACTTCAAGCCGAACGGCATTGAG
ATCGGCGTGGTCAGCAAGTCTGATCCCACTTTCCGTATTTTGGATGAGCG
GGAGATCGAGGAACACCTCACCAAGATCGCCGAGAAGGACGCAAGCTTTC
TAGACC
MXO52548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18495-PB | 735 | Prosalpha6-RB | 1..732 | 9..740 | 3585 | 99.5 | Plus |
| CG18495-PA | 735 | Prosalpha6-RA | 1..732 | 9..740 | 3585 | 99.5 | Plus |
| CG30382-PA | 735 | CG30382-RA | 1..732 | 9..740 | 3585 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha1-RB | 969 | CG18495-RB | 136..868 | 8..740 | 3620 | 99.6 | Plus |
| Prosalpha1-RA | 902 | CG18495-RA | 69..801 | 8..740 | 3620 | 99.6 | Plus |
| CG30382-RB | 885 | CG30382-RB | 52..784 | 8..740 | 3620 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7827404..7827885 | 740..259 | 2380 | 99.6 | Minus |
| 2R | 25286936 | 2R | 7830514..7830995 | 740..259 | 2380 | 99.6 | Minus |
| 2R | 25286936 | 2R | 7828171..7828348 | 261..84 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 7831281..7831458 | 261..84 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 7828410..7828486 | 84..8 | 370 | 98.7 | Minus |
| 2R | 25286936 | 2R | 7831520..7831596 | 84..8 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:59 has no hits.
MXO52548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:06 Download gff for
MXO52548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30382-PA | 1..735 | 9..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:47 Download gff for
MXO52548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30382-RB | 46..792 | 1..751 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:43 Download gff for
MXO52548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30382-RB | 46..792 | 1..751 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:43 Download gff for
MXO52548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7828410..7828489 | 1..84 | 94 | | Minus |
| 2R | 7827396..7827882 | 262..751 | 98 | <- | Minus |
| 2R | 7828171..7828347 | 85..261 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:47 Download gff for
MXO52548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3714901..3715387 | 262..751 | 98 | <- | Minus |
| arm_2R | 3715676..3715852 | 85..261 | 100 | <- | Minus |
| arm_2R | 3715915..3715994 | 1..84 | 94 | | Minus |
