MXO52549.5prime Sequence
663 bp (663 high quality bases) assembled on 2007-04-11
> MXO52549.5prime
CAGTCGACATGTCCTACGCGTACTCTTTCAAATACATCATTATCGGAGAC
ACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGACAAGCGATT
CCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGCACGCATGA
TCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACACGGCTGGG
CAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGAGCTGCTGG
CGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAACCACCTGA
CCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACATGGTCATT
ATGCTGATAGGCAACAAGAGCGATTTGTATTCGCGGCGTGAGGTGAAGAA
AGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTTCATGGAGA
CTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAAATACGGCC
AAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATCAACAATGA
GGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAACCCGTCGC
TCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCTGCTGCGCA
AGCTTTCTAGACC
MXO52549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3269-PA | 642 | Rab2-RA | 1..639 | 9..647 | 3120 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab2-RB | 1087 | CG3269-RB | 144..784 | 7..647 | 3160 | 99.5 | Plus |
| Rab2-RA | 1712 | CG3269-RA | 144..784 | 7..647 | 3160 | 99.5 | Plus |
| Rab14-RD | 878 | CG4212-RD | 100..343 | 24..268 | 315 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6698047..6698386 | 213..552 | 1685 | 99.7 | Plus |
| 2R | 25286936 | 2R | 6697413..6697575 | 52..214 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 6698444..6698541 | 550..647 | 490 | 100 | Plus |
| 2L | 23513712 | 2L | 14357540..14357688 | 120..268 | 250 | 77.9 | Plus |
| 2R | 25286936 | 2R | 6696882..6696940 | 7..65 | 220 | 91.5 | Plus |
| 2L | 23513712 | 2L | 14357385..14357450 | 30..95 | 180 | 84.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:01 has no hits.
MXO52549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:06 Download gff for
MXO52549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3269-PA | 1..642 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:58 Download gff for
MXO52549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 144..784 | 7..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:28 Download gff for
MXO52549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 144..784 | 7..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:28 Download gff for
MXO52549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6696882..6696929 | 7..54 | 95 | -> | Plus |
| 2R | 6697416..6697575 | 55..214 | 100 | -> | Plus |
| 2R | 6698049..6698385 | 215..551 | 99 | -> | Plus |
| 2R | 6698446..6698541 | 552..647 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:58 Download gff for
MXO52549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2584387..2584434 | 7..54 | 95 | -> | Plus |
| arm_2R | 2584921..2585080 | 55..214 | 100 | -> | Plus |
| arm_2R | 2585554..2585890 | 215..551 | 99 | -> | Plus |
| arm_2R | 2585951..2586046 | 552..647 | 100 | | Plus |
