MXO52550.5prime Sequence
708 bp (708 high quality bases) assembled on 2007-04-11
> MXO52550.5prime
CAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCTTCGAGGAG
CCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTGGAGACAAA
TGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGGCCGCTGGT
CTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATTACATCTCG
GTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGACGTTATGC
CGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCGTTTGACCT
GCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGATGGCCTGC
CGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACCGGGGAGAA
CCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACCCCGTGAGG
ACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGGCCGTCGAT
GTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTGTGCACTGG
AGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGAGTGCCTGG
CTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGTACGCCATC
AAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGTGCAAGCTT
TCTAGACC
MXO52550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8922-PA | 687 | RpS5a-RA | 1..684 | 9..692 | 3420 | 100 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 586..683 | 588..685 | 290 | 91.8 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 202..290 | 204..292 | 170 | 87.6 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 343..386 | 345..388 | 145 | 93.1 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 484..527 | 486..529 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS5a-RA | 864 | CG8922-RA | 61..746 | 7..692 | 3430 | 100 | Plus |
| RpS5a-RD | 809 | CG8922-RD | 7..691 | 8..692 | 3425 | 100 | Plus |
| RpS5a-RC | 1380 | CG8922-RC | 578..1262 | 8..692 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17146798..17147200 | 410..8 | 2015 | 100 | Minus |
| 3R | 32079331 | 3R | 14900952..14901358 | 528..122 | 970 | 82.6 | Minus |
| X | 23542271 | X | 17145015..17145137 | 528..406 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 14900530..14900697 | 692..525 | 525 | 87.5 | Minus |
| X | 23542271 | X | 17144617..17144718 | 627..526 | 510 | 100 | Minus |
| X | 23542271 | X | 17143706..17143773 | 692..625 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:10 has no hits.
MXO52550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:07 Download gff for
MXO52550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8922-PA | 1..687 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:12 Download gff for
MXO52550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS5a-RA | 58..750 | 1..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:01 Download gff for
MXO52550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS5a-RA | 58..750 | 1..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:01 Download gff for
MXO52550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17146798..17147203 | 1..410 | 99 | | Minus |
| X | 17143702..17143771 | 627..697 | 97 | <- | Minus |
| X | 17144618..17144716 | 528..626 | 100 | <- | Minus |
| X | 17145016..17145132 | 411..527 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:12 Download gff for
MXO52550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17037735..17037804 | 627..697 | 97 | <- | Minus |
| arm_X | 17038651..17038749 | 528..626 | 100 | <- | Minus |
| arm_X | 17039049..17039165 | 411..527 | 100 | <- | Minus |
| arm_X | 17040831..17041236 | 1..410 | 99 | | Minus |
