MXO52552.5prime Sequence
783 bp (736 high quality bases) assembled on 2007-04-11
> MXO52552.5prime
CAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGGCCTCGCAG
TTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCAAAGGCGGT
GGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGCCGTGGTGC
TGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAGACGCCGGC
GGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTGGCCGGCTT
GGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGAGGCAGCCA
ACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACCTGTGCCAC
CGAGTCGCCGGCTACGTTCACGCCTACTCTCTGTACAGTGCCGTCCGCCC
CTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGAGGGGCCAC
AGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACTTCGCCTGC
GCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGCTCAA
GATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATCATCT
ACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAATGGGT
TTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAGAACT
GACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAAGACA
GCGACAATGAGACGCACGCAAGCTTTCTAGACC
MXO52552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1519-PA | 762 | Prosalpha7-RA | 1..759 | 9..767 | 3770 | 99.8 | Plus |
| CG1519-PB | 708 | Prosalpha7-RB | 1..421 | 9..429 | 2080 | 99.7 | Plus |
| CG1519-PB | 708 | Prosalpha7-RB | 416..705 | 478..767 | 1450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha7-RA | 976 | CG1519-RA | 120..878 | 9..767 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9847073..9847638 | 595..30 | 2815 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9846734..9846905 | 767..596 | 860 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 518..567 | 136 | 80 | Plus |
MXO52552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:08 Download gff for
MXO52552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1519-PA | 1..762 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:39 Download gff for
MXO52552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..883 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:53 Download gff for
MXO52552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..883 | 1..775 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:53 Download gff for
MXO52552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9846729..9846905 | 596..775 | 97 | <- | Minus |
| 2R | 9847073..9847638 | 30..595 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:39 Download gff for
MXO52552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5734234..5734410 | 596..775 | 97 | <- | Minus |
| arm_2R | 5734578..5735143 | 30..595 | 99 | <- | Minus |
