MXO52553.5prime Sequence
808 bp (756 high quality bases) assembled on 2007-04-11
> MXO52553.5prime
CAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAACCGACAGCA
GCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACGAGCACCTC
GACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACACATCCTCGT
CGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGGGCATGTCC
GCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGACTATGTGCT
ACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGTGTCCTGTC
GCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGGCGAATATC
CGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTCCCGTGCAA
GCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGAAAAGACAG
AACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGTGCCCGGGC
GCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAGCATCTGAT
GATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACATCGTGTTCC
TGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAATGATGCAG
TCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAGTA
CGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGGGTCGCGCA
AGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAAACCGACGC
CGGCTCAC
MXO52553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9949-PA | 945 | sina-RA | 1..800 | 9..808 | 4000 | 100 | Plus |
| CG9949-PB | 945 | sina-RB | 1..800 | 9..808 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sina-RC | 3124 | CG9949-RC | 830..1629 | 9..808 | 4000 | 100 | Plus |
| sina-RB | 2482 | CG9949-RB | 188..987 | 9..808 | 4000 | 100 | Plus |
| sina-RA | 3191 | CG9949-RA | 897..1696 | 9..808 | 4000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16856418..16857217 | 9..808 | 4000 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 121..8 | 133 | 63 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 41..98 | 126 | 72.1 | Plus |
MXO52553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:08 Download gff for
MXO52553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9949-PB | 1..800 | 9..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:09 Download gff for
MXO52553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 890..1696 | 1..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:34 Download gff for
MXO52553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 890..1696 | 1..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:34 Download gff for
MXO52553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16856411..16857217 | 1..808 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:09 Download gff for
MXO52553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16849511..16850317 | 1..808 | 99 | | Plus |
