MXO52554.5prime Sequence
193 bp (24 high quality bases) assembled on 2007-04-11
> MXO52554.5prime
CAATCCACATGTGCGCGTGCCTAATCGCTAATATAATTCTATGTAGTTTT
CGTTTGTATACAAGAATTGCCTTTTATATGTTAACGACGATGCCACCCAC
CTTCAATACAAACAGCCTGATCGACAAGGATATCGACGACGAGGACATGC
TTTCGCCGATCAATTCCAACAACCTGCGTGGTGCGGGTCAACC
MXO52554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4005-PB | 1101 | CG4005-RB | 1..84 | 9..92 | 345 | 96.4 | Plus |
CG4005-PA | 1101 | CG4005-RA | 1..84 | 9..92 | 345 | 96.4 | Plus |
CG4005-PC | 1257 | CG4005-RC | 1..84 | 9..92 | 345 | 96.4 | Plus |
CG4005-PB | 1101 | CG4005-RB | 96..184 | 104..193 | 335 | 95.5 | Plus |
CG4005-PA | 1101 | CG4005-RA | 96..184 | 104..193 | 335 | 95.5 | Plus |
CG4005-PC | 1257 | CG4005-RC | 96..184 | 104..193 | 335 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yki-RF | 1525 | CG4005-RF | 171..354 | 9..193 | 735 | 93.5 | Plus |
yki-RD | 1369 | CG4005-RD | 171..354 | 9..193 | 735 | 93.5 | Plus |
yki-RG | 1460 | CG4005-RG | 106..289 | 9..193 | 735 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24068132..24068315 | 193..9 | 710 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:19 has no hits.
MXO52554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:09 Download gff for
MXO52554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4005-PC | 1..184 | 9..193 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:09 Download gff for
MXO52554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yki-RG | 101..289 | 1..193 | 91 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:51 Download gff for
MXO52554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yki-RG | 101..289 | 1..193 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:51 Download gff for
MXO52554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24068132..24068320 | 1..193 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:09 Download gff for
MXO52554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19955655..19955843 | 1..193 | 91 | | Minus |