MXO52557.5prime Sequence
948 bp (822 high quality bases) assembled on 2007-04-11
> MXO52557.5prime
CAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAAGCAGAAGG
ACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCAGCCAGCGA
TCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCAGCAGCAAC
AACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGTTCCAGGCC
CACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAGGAACAGCC
TGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGGCAGCCTTA
GCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACTCATTTCGT
CATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCATGGCTCTCG
TCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAATCTTCAACT
CGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCGATCATTTG
GTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGCAAGAGTGA
CATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAAGCTCATCG
AAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTCAGAAGGTT
TGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGGCAAAACCG
CCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGAGTTGTTCT
CAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACATTGGCGAG
ATAGCACTTGCCTTGGATTTTCTCCACAACGCTGGGATTATATATCGTGA
TGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACATAAAGCTAA
CCGACTTCGGCCTTAGCAAGTGGCTCAAACTGGGGGCAAACACGCGCA
MXO52557.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7001-PA | 1452 | Pk17E-RA | 1..940 | 9..948 | 4700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk17E-RA | 2129 | CG7001-RA | 369..1308 | 9..948 | 4700 | 100 | Plus |
| Pk17E-RC | 2123 | CG7001-RC | 369..1302 | 9..948 | 4600 | 99.4 | Plus |
| Pk17E-RB | 1651 | CG7001-RB | 145..830 | 263..948 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18788832..18789089 | 9..266 | 1290 | 100 | Plus |
| X | 23542271 | X | 18790675..18790893 | 375..593 | 1095 | 100 | Plus |
| X | 23542271 | X | 18791300..18791432 | 816..948 | 665 | 100 | Plus |
| X | 23542271 | X | 18790956..18791081 | 592..717 | 630 | 100 | Plus |
| X | 23542271 | X | 18790503..18790615 | 264..376 | 565 | 100 | Plus |
| X | 23542271 | X | 18791146..18791244 | 718..816 | 495 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 139..296 | 202 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 62..271 | 198 | 60.6 | Plus |
MXO52557.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:09 Download gff for
MXO52557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7001-PA | 1..939 | 9..947 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:41 Download gff for
MXO52557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1307 | 9..947 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:41 Download gff for
MXO52557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1307 | 9..947 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:41 Download gff for
MXO52557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18788832..18789089 | 9..266 | 100 | -> | Plus |
| X | 18790506..18790615 | 267..376 | 100 | -> | Plus |
| X | 18790677..18790893 | 377..593 | 100 | -> | Plus |
| X | 18790958..18791081 | 594..717 | 100 | -> | Plus |
| X | 18791146..18791244 | 718..816 | 100 | -> | Plus |
| X | 18791301..18791431 | 817..947 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:41 Download gff for
MXO52557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18682865..18683122 | 9..266 | 100 | -> | Plus |
| arm_X | 18684539..18684648 | 267..376 | 100 | -> | Plus |
| arm_X | 18684710..18684926 | 377..593 | 100 | -> | Plus |
| arm_X | 18684991..18685114 | 594..717 | 100 | -> | Plus |
| arm_X | 18685179..18685277 | 718..816 | 100 | -> | Plus |
| arm_X | 18685334..18685464 | 817..947 | 100 | | Plus |
