MXO52561.5prime Sequence
897 bp (798 high quality bases) assembled on 2007-04-11
> MXO52561.5prime
CAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGGCGGCCGCA
GTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTTTCCACGGC
CTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGGTTGGTTGG
AGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGGATTTTGGA
TGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAACCCATCGA
GAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGAGCGACGCG
CCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCAAGGATGAG
GAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGCACCCCCCAATAGCTG
TGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGAGAACAATC
TTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCAAAGGCATG
AGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAGCTGGCCTG
TGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCTAGAAAGGA
CGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGTTTCACTTC
GTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGATGGCTTGAA
ACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGATTGGACAG
ATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGACCGGCGAA
CAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGGCGGATTGC
CATAACACATAAACTTAAGATGCTGCGCACAAACAGGCAATCGTGTC
MXO52561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8445-PA | 1416 | CG8445-RA | 381..890 | 389..897 | 2510 | 99.8 | Plus |
| CG8445-PB | 1416 | CG8445-RB | 381..890 | 389..897 | 2510 | 99.8 | Plus |
| CG8445-PA | 1416 | CG8445-RA | 1..376 | 9..384 | 1880 | 100 | Plus |
| CG8445-PB | 1416 | CG8445-RB | 1..376 | 9..384 | 1880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| calypso-RA | 2147 | CG8445-RA | 359..1248 | 9..897 | 4380 | 99.6 | Plus |
| calypso-RB | 2117 | CG8445-RB | 329..1218 | 9..897 | 4380 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16194961..16195657 | 897..202 | 3390 | 99.4 | Minus |
| 2R | 25286936 | 2R | 16195715..16195909 | 203..9 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:10 has no hits.
MXO52561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:10 Download gff for
MXO52561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8445-PB | 1..890 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:59 Download gff for
MXO52561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| calypso-RB | 329..1218 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:27 Download gff for
MXO52561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| calypso-RB | 329..1218 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:27 Download gff for
MXO52561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16194961..16195657 | 202..897 | 99 | <- | Minus |
| 2R | 16195717..16195909 | 9..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:59 Download gff for
MXO52561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12082466..12083162 | 202..897 | 99 | <- | Minus |
| arm_2R | 12083222..12083414 | 9..201 | 100 | | Minus |
