MXO52562.5prime Sequence
645 bp (645 high quality bases) assembled on 2007-04-11
> MXO52562.5prime
CAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCATCATTCTG
GGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTATGTAAACAA
ACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTTCTGCACGA
AAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCTGGGACACT
GCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTACCGCGGAGC
CGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTCGTTCAAGA
ATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTCCACGGGAT
CCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGATTTGGACAA
CCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCAATCTAAGAACG
ATATACCCTACTACGAAACGTCCGCCAAGGAGGGCATCAACGTGGAGATG
GCGTTTCAAGTTATAGCCAAGAATGCGTTAGAGTTGGAGGCGGAGGCTGA
AGTTATCAACGATTTCCCCGATCAGATTACCTTGGGCTCGCAAAACAATC
GTCCTGGCAATCCTGACAACTGTCAGTGCGCAAGCTTTCTAGACC
MXO52562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5915-PA | 624 | Rab7-RA | 1..621 | 9..629 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab7-RC | 1280 | CG5915-RC | 150..775 | 4..629 | 3115 | 99.8 | Plus |
| Rab7-RB | 1269 | CG5915-RB | 139..764 | 4..629 | 3115 | 99.8 | Plus |
| Rab7-RA | 1515 | CG5915-RA | 185..810 | 4..629 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23994243..23994603 | 186..546 | 1805 | 100 | Plus |
| 3R | 32079331 | 3R | 23993997..23994181 | 4..188 | 910 | 99.5 | Plus |
| 3R | 32079331 | 3R | 23994662..23994747 | 544..629 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:14 has no hits.
MXO52562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:11 Download gff for
MXO52562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5915-PA | 1..624 | 9..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:50 Download gff for
MXO52562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab7-RA | 183..813 | 1..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:52 Download gff for
MXO52562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab7-RA | 183..813 | 1..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:52 Download gff for
MXO52562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23994664..23994750 | 546..633 | 97 | | Plus |
| 3R | 23993995..23994181 | 1..188 | 98 | -> | Plus |
| 3R | 23994246..23994602 | 189..545 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:50 Download gff for
MXO52562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19820386..19820472 | 546..633 | 97 | | Plus |
| arm_3R | 19819717..19819903 | 1..188 | 98 | -> | Plus |
| arm_3R | 19819968..19820324 | 189..545 | 100 | -> | Plus |
