Clone MXO52566 Report

Search the DGRC for MXO52566

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:525
Well:66
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCSN4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52566.5prime Sequence

246 bp (21 high quality bases) assembled on 2007-04-11

> MXO52566.5prime
CAATCCACATGGCCGCAAACTACTGCATCTCGACGGCACCTCTGCGTAGC
CAGCTGATGGACCTGATCTACTTCACTGGCACGCACAAGGACCAGGCGGA
CTTTTACCGCCAGCTGCTGAATACTGTGCTGACCAACACCGGCCAACAGC
TGATCGATGGCCTCCGGCTCTTTGTGGAGGCCATTGTAAACTATCACGTC
AGCCTGGTGATCTCGCGGCAGATCCTTAACAACGTGGGCAGCGAGC

MXO52566.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8725-PA 1224 CSN4-RA 97..238 105..246 535 95 Plus
CG8725-PA 1224 CSN4-RA 1..93 9..101 365 95.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-RB 1466 CG8725-RB 42..279 9..246 980 94.1 Plus
CSN4-RA 1703 CG8725-RA 279..516 9..246 980 94.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7972616..7972853 9..246 980 94.1 Plus
Blast to na_te.dros performed on 2014-11-28 20:09:40 has no hits.

MXO52566.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:12 Download gff for MXO52566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8725-PA 1..238 9..246 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:05 Download gff for MXO52566.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 279..516 9..246 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:14 Download gff for MXO52566.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 279..516 9..246 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:14 Download gff for MXO52566.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7972616..7972853 9..246 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:05 Download gff for MXO52566.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3860121..3860358 9..246 94   Plus