MXO52567.5prime Sequence
822 bp (820 high quality bases) assembled on 2007-04-11
> MXO52567.5prime
CAGTCGACATGCCGCCCACCATAACCGATAATCAGACGCACGACTTTAAG
GCCCACTACGATTGCGCCCACAGGTCCTCGCTGCAGGACGACGAGACGGA
CGATGCGTACGTGAAAAGGATAACGCGGTACTCCGATGGAACCGTCAAAT
TGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTG
GCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAA
GTTCGTTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATT
TCATAATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAG
GACATCAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGT
GCTGTGCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGC
ATGAGATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTC
ATCAGGATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCAT
CATCACCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTA
CCATTCTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTG
GCCCGTGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTACGATACCAT
TATTGGCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTT
TGGACGGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTG
GAGAAGCTGCGCGAGAACGGCG
MXO52567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-PA | 1107 | CG6330-RA | 1..814 | 9..822 | 4070 | 100 | Plus |
CG6330-PB | 1044 | CG6330-RB | 57..751 | 128..822 | 3475 | 100 | Plus |
CG3788-PA | 1137 | CG3788-RA | 472..518 | 459..505 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RA | 1541 | CG6330-RA | 132..946 | 8..822 | 4075 | 100 | Plus |
CG6330-RB | 2075 | CG6330-RB | 355..1049 | 128..822 | 3475 | 100 | Plus |
CG3788-RB | 1758 | CG3788-RB | 928..1104 | 377..553 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26951072..26951428 | 599..243 | 1755 | 99.4 | Minus |
3R | 32079331 | 3R | 26950787..26951009 | 822..600 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 26951775..26951899 | 251..127 | 625 | 100 | Minus |
3R | 32079331 | 3R | 26953001..26953123 | 130..8 | 615 | 100 | Minus |
2R | 25286936 | 2R | 22932746..22932922 | 553..377 | 345 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-28 20:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 255..173 | 111 | 60.7 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 255..173 | 111 | 60.7 | Minus |
MXO52567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:13 Download gff for
MXO52567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-PA | 1..814 | 9..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:07 Download gff for
MXO52567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 129..946 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:19 Download gff for
MXO52567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 129..946 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:19 Download gff for
MXO52567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26950787..26951009 | 600..822 | 100 | <- | Minus |
3R | 26951072..26951419 | 252..599 | 100 | <- | Minus |
3R | 26951775..26951898 | 128..251 | 100 | <- | Minus |
3R | 26953004..26953126 | 1..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:07 Download gff for
MXO52567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22776509..22776731 | 600..822 | 100 | <- | Minus |
arm_3R | 22776794..22777141 | 252..599 | 100 | <- | Minus |
arm_3R | 22777497..22777620 | 128..251 | 100 | <- | Minus |
arm_3R | 22778726..22778848 | 1..127 | 96 | | Minus |